| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3207 |
|---|
| Symbol | |
|---|
| ID | 5870992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3591807 |
|---|
| End bp | 3592601 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641548323 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001669435 |
|---|
| Protein GI | 167034204 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTA ACGGCCCGTT GGCCCTGTCT TTTCACGCCC TGGTGATGGT GTTCATGCTC
GCCCCGCTGG TGGTGGTGTG CCTGGTGGCA TTTACCCCGG AAAACACCCT GAGCCTGCCC
ACCGCTGGCT TCTCGCTGCG CTGGTTCAGC GCCGTGTTCG AGCGCGCCGA CTTCCTTGAC
GCGTTCTACA ACAGCCTGAA ACTCGCCGCC CTGGCGGCCT CGTTGGCCAC CCTGATCGCC
GTGCCGGCGG GCCTGGCGCT GACCCGCTAC AGCTTCCCTG GCCAAGGTTT TGTCAACGGC
CTGCTGCTGT CGCCGATCAT CATCCCGCAC CTGGTGCTGG GCGTAGCGCT GCTGCGGCTG
TTCGCCCTGC TGGGGGTCAA TGGCAGCTTT GCCTGGCTGG TGTTCGCCCA CGTGGTGGTG
ATCACGCCCT ACGTGCTGCG CCTGGTACTG GCTGCGGCCA TCGGCATCGA CCGCAGCGCC
GAGCAGGCCG CACAAAGCCT GGGCGCCGGC CGCATCACGC TGTTCTGCAA AGTGACCCTG
CCGATGATCC TGCCGGGCGT GGCCGGTGGC TGGCTGCTGG CGTTCATCAA CAGTTTCGAC
GAAGTGACCC TGTCGATCTT CGTCACCTCG CCCGCCACCC AAACGCTGCC TGTACGCATG
TACGTATACG CCACCGAGTC GATCGACCCG ATGATGGCCG CCGTTTCGGC CCTGGTGATC
GCCGTCACCG CCCTGACCAT GATCGCCCTG GACCGGGTAT ACGGCCTGGA CCGCGTGCTG
GTGGGCAAGC AATGA
|
|---|
| Protein sequence | MTRNGPLALS FHALVMVFML APLVVVCLVA FTPENTLSLP TAGFSLRWFS AVFERADFLD
AFYNSLKLAA LAASLATLIA VPAGLALTRY SFPGQGFVNG LLLSPIIIPH LVLGVALLRL
FALLGVNGSF AWLVFAHVVV ITPYVLRLVL AAAIGIDRSA EQAAQSLGAG RITLFCKVTL
PMILPGVAGG WLLAFINSFD EVTLSIFVTS PATQTLPVRM YVYATESIDP MMAAVSALVI
AVTALTMIAL DRVYGLDRVL VGKQ
|
|---|
| |