| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3816 |
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| Symbol | |
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| ID | 1046749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 4342290 |
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| End bp | 4343099 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637147224 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | NP_745946 |
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| Protein GI | 26990521 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0037178 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.4746 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCCTGT CTCCCAATGC CATGGGCCGC CCGCTGCGTA CGGGCCTGTA CCTGACCACC
GGGGTCATCG CGGCCTTCCT GCTGCTGCCG GTGGTGTTCA TCGTGTTGCT GTCATTCGGC
TCGTCACAGT GGCTGGTGTT CCCGCCACCG GGCTGGACCT TCAAGTGGTA CGGCCAGTTT
TTCTCCAACC CGGAGTGGAT GGACGCCGCA CTGGCCAGCC TGAAGGTGGC CGTGCTGACC
ACCATCGCCG CCGTGTTGCT GGGCCTGCCC AGCGCATTCG CCCTGGTGCG TGGCCGCTTC
CCGGGCCGCG AGCTGCTGTA CGGGCTGTTT ACCATGCCGA TGATCGTGCC GCTGGTGATC
ATTGCCGTGG CGGTATACGC ACTGTTCCTC AAGCTAGGTT ACACCGGCAC GCTGTTCGCC
TTCGTGGTCA GCCACGTGAT CGTCGCCCTG CCGTTCACGA TCATCTCGAT CATCAACTCG
CTGAAGCTGT TCGACCAGTC GATCGAAGAT GCTGCGGTGA TCTGCGGCGC CTCGCGCCTG
CAGGCGATTT TCAAGGTCAC GTTCCCGGCC ATCCGCCCCG GCATGATCGC CGGTGGCCTG
TTCGCTTTCC TGGTGTCGTG GGATGAAGTG GTGCTGAGCG TGATGATGGC CAGCCCCGAC
CTGCAGACCC TGCCAGTGAA GATGTGGACC ACCCTGCGCC AGGACCTCAG CCCCGTGATC
GCCGTGGCCT CGACCCTGCT GATCGGCCTG TCGTTGCTGG TCATGTTCAT TGCCGCCGCC
TTGCGCCGGC GCACCGAAAC CAACGCCTGA
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| Protein sequence | MLLSPNAMGR PLRTGLYLTT GVIAAFLLLP VVFIVLLSFG SSQWLVFPPP GWTFKWYGQF
FSNPEWMDAA LASLKVAVLT TIAAVLLGLP SAFALVRGRF PGRELLYGLF TMPMIVPLVI
IAVAVYALFL KLGYTGTLFA FVVSHVIVAL PFTIISIINS LKLFDQSIED AAVICGASRL
QAIFKVTFPA IRPGMIAGGL FAFLVSWDEV VLSVMMASPD LQTLPVKMWT TLRQDLSPVI
AVASTLLIGL SLLVMFIAAA LRRRTETNA
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