| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5130 |
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| Symbol | |
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| ID | 6412824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5515977 |
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| End bp | 5517767 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642715015 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001994094 |
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| Protein GI | 192293489 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I
[COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACGC TCTCGCTGAC CGACGAGCCG CGGCAGCCGG CCTCCAGTCT GGCGATGAAG
CTGAAGAACC CGGCGCTGCT GCTGCTGCCG GCGGTGGCGT TTCTGGGCTT CATCTATCTG
CTGCCGCTGA TCGACCTGAT CCGGATCAGC ATCAGCGGTC CGAGCTGGCT GACTTACTTC
CAGCGCGTCT TCGCGGTGCC GCTGTACTGG GAATCGCTGG TCCGGACCAT GCAGATCTCG
GTCACGGTGG CGTTCCTGTG CCTGCTGTTC GGCTATCCCA CCGCGCTTCT GATCCATCGT
ACCCAGGGTC TCACCCGGGC GCTGATCGCC ACCGCGATCG TGCTGCCATA CTTCATTGCC
ATCCTGATCC GCACCTACGC CTGGATGGTG CTCCTCGGCC GCACCGGGCC GGTCAACAAG
CTGCTGGTGG CGATCGGCAT TCTGGGCGAG CCGGTGCAAT TGCTGTTTCA TCGCGGTACC
GTGCTGCTCG GCATGACCGC CGTGCTGCTG CCGCTGATGG TGCTGACGAT TTATTCCAGC
GTATCGCGGC TCGATCCCGG CCTGACCCGT GCCGCGCTCG CCTCCGGCGC CGGCCCGATC
GCCGTGTTCT GGCGCGTGCT ACTGCCGCTG ACGCTGCCCG GCATCGGCGC CGGCTTCCTG
CTGGTGTTCG TTGCGGCGAT CGGCTTCTTC ATTACACCGA CGCTGCTCGG CGGGCCGGGC
GACCAGATGT TCGCCATGCA CATCACCCAG CAGGCGGATT CGGTGACGTC GGAAGGCTTC
CTGCAAGCGC TCGGCGTGGT GCTGCTGCTG ATCACCCTGG CGGTGGTGGC GATCGCCGGA
CGCTTCCTCG GCCTCGAATT CATCTGGGGC GGTCGCAAGC TGACCGAGTC GAATGCGGCG
AGCACGACGA GCACGGCTGC CGATGATCCG ACGCGCCGCT CGATCGGCAG CAGCCTTGCC
GACACGATCG GCTGGCCGCT GCTGCGCCTG CTCGGACTGC TGCCGGCCGG CGTCGGCACC
TGGACGGTGC GGGTGATGGG CGGTGTCGTC GTCGCCGTGC TGATCCTTCC CATCGTCGTG
GTGATGGTGA TCTCGTTCAG CAGCGCCAGC TATCTGACTT TCCCGCCGCC GGGCTTCTCG
CTGCGCTGGT ACGAGCAGTT CTTCTCGGAC ACCAACTGGA TGCGGGCGTT CTGGACCTCG
GCGCTGATCG CTTTGGTGTC GGCCGCGATC GCTGTCGGTC TCGGCACCTG CGCGGCGCTC
GGCATCGTTC GCGGCGACAT TCGCGGCAAG TCCGCCATCA TGCTGCTGCT GGTCAGCCCG
ATCATCGTGC CGCCGGTAGT GCTCGGCCTG TCGCTCTACA CCCTGTTCCT GAAATTCGAT
CTGATCGGCT CGGTGTTCGG CCTCGCTGCG GCCCACGCCA TCGGCGGCCT GCCGATCGTA
GTGGTGATCC TGGCGGCGGC GCTGCAGGGC GTCGACAAGC GGCTCGAACA GGCCGCGGCT
GTGCATGGTG CATCGTCGCT GACCGTGCTG CGGCTGGTGA CGCTGCCGGC GATTGCGCCG
GGCCTCGCAG CCGCGACCTT CTTCGCTTTC CTGCATTCGT TCGACGAGCT GGTGCTGACC
CTGTTCCTGT CGAGCGCGCA GCTCAAGACT CTGCCGCTGA TGCTGTGGGG CGACATCAAC
TATCGGCTTA ATCCGGTACT GGCGGTGGTT TCCACGCTCG AAGTTCTGCT GGTCGTGGGA
GGACTGTTCC TTGCCCGGCC GGTCCTGGCG ACCTCGCAAA AAGCGAACTG A
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| Protein sequence | MTTLSLTDEP RQPASSLAMK LKNPALLLLP AVAFLGFIYL LPLIDLIRIS ISGPSWLTYF
QRVFAVPLYW ESLVRTMQIS VTVAFLCLLF GYPTALLIHR TQGLTRALIA TAIVLPYFIA
ILIRTYAWMV LLGRTGPVNK LLVAIGILGE PVQLLFHRGT VLLGMTAVLL PLMVLTIYSS
VSRLDPGLTR AALASGAGPI AVFWRVLLPL TLPGIGAGFL LVFVAAIGFF ITPTLLGGPG
DQMFAMHITQ QADSVTSEGF LQALGVVLLL ITLAVVAIAG RFLGLEFIWG GRKLTESNAA
STTSTAADDP TRRSIGSSLA DTIGWPLLRL LGLLPAGVGT WTVRVMGGVV VAVLILPIVV
VMVISFSSAS YLTFPPPGFS LRWYEQFFSD TNWMRAFWTS ALIALVSAAI AVGLGTCAAL
GIVRGDIRGK SAIMLLLVSP IIVPPVVLGL SLYTLFLKFD LIGSVFGLAA AHAIGGLPIV
VVILAAALQG VDKRLEQAAA VHGASSLTVL RLVTLPAIAP GLAAATFFAF LHSFDELVLT
LFLSSAQLKT LPLMLWGDIN YRLNPVLAVV STLEVLLVVG GLFLARPVLA TSQKAN
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