More than 300 homologs were found in PanDaTox collection
for query gene Amir_1608 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_1608  short-chain dehydrogenase/reductase SDR  100 
 
 
270 aa  523  1e-147  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0626864  n/a   
 
 
-
 
NC_013510  Tcur_2091  short-chain dehydrogenase/reductase SDR  56.97 
 
 
260 aa  269  4e-71  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0967231  n/a   
 
 
-
 
NC_013739  Cwoe_4573  short-chain dehydrogenase/reductase SDR  58.02 
 
 
262 aa  244  6.999999999999999e-64  Conexibacter woesei DSM 14684  Bacteria  normal  0.607483  normal  0.825544 
 
 
-
 
NC_013131  Caci_3261  short-chain dehydrogenase/reductase SDR  44.31 
 
 
274 aa  176  3e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_5009  short-chain dehydrogenase/reductase SDR  43.72 
 
 
261 aa  172  5.999999999999999e-42  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5302  short-chain dehydrogenase/reductase SDR  43.72 
 
 
261 aa  172  5.999999999999999e-42  Mycobacterium sp. JLS  Bacteria  normal  0.870324  normal 
 
 
-
 
NC_008146  Mmcs_4920  short-chain dehydrogenase/reductase SDR  43.72 
 
 
261 aa  172  5.999999999999999e-42  Mycobacterium sp. MCS  Bacteria  normal  0.369643  n/a   
 
 
-
 
NC_009338  Mflv_1267  short-chain dehydrogenase/reductase SDR  42.62 
 
 
261 aa  172  7.999999999999999e-42  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0274086 
 
 
-
 
NC_013757  Gobs_2650  short-chain dehydrogenase/reductase SDR  42.86 
 
 
267 aa  171  1e-41  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.15589  n/a   
 
 
-
 
NC_009921  Franean1_0465  short-chain dehydrogenase/reductase SDR  40.52 
 
 
235 aa  150  3e-35  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_4192  short-chain dehydrogenase/reductase SDR  38.98 
 
 
274 aa  132  6.999999999999999e-30  Mycobacterium sp. KMS  Bacteria  normal  0.879856  normal 
 
 
-
 
NC_008146  Mmcs_4117  short-chain dehydrogenase/reductase SDR  38.98 
 
 
274 aa  132  6.999999999999999e-30  Mycobacterium sp. MCS  Bacteria  normal  0.0106138  n/a   
 
 
-
 
NC_009439  Pmen_2680  short chain dehydrogenase  42.63 
 
 
253 aa  132  7.999999999999999e-30  Pseudomonas mendocina ymp  Bacteria  normal  0.313407  normal  0.819387 
 
 
-
 
NC_009077  Mjls_4348  short-chain dehydrogenase/reductase SDR  38.56 
 
 
274 aa  130  2.0000000000000002e-29  Mycobacterium sp. JLS  Bacteria  normal  normal  0.201544 
 
 
-
 
NC_013510  Tcur_1562  short-chain dehydrogenase/reductase SDR  42.79 
 
 
275 aa  129  5.0000000000000004e-29  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0498761  n/a   
 
 
-
 
NC_008686  Pden_1255  3-ketoacyl-(acyl-carrier-protein) reductase  41.49 
 
 
247 aa  129  7.000000000000001e-29  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4194  short chain dehydrogenase  41.58 
 
 
253 aa  127  2.0000000000000002e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.896625 
 
 
-
 
NC_013730  Slin_3152  short-chain dehydrogenase/reductase SDR  34.45 
 
 
250 aa  127  2.0000000000000002e-28  Spirosoma linguale DSM 74  Bacteria  normal  0.182399  normal 
 
 
-
 
NC_009512  Pput_3894  short chain dehydrogenase  45.31 
 
 
253 aa  127  2.0000000000000002e-28  Pseudomonas putida F1  Bacteria  normal  0.933722  normal  0.0806905 
 
 
-
 
NC_010322  PputGB1_1396  short chain dehydrogenase  45.83 
 
 
253 aa  127  2.0000000000000002e-28  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1849  short chain dehydrogenase  42.41 
 
 
255 aa  127  2.0000000000000002e-28  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.838313 
 
 
-
 
NC_009656  PSPA7_3623  short chain dehydrogenase  42.55 
 
 
253 aa  126  5e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0211534  n/a   
 
 
-
 
NC_002947  PP_1817  short chain dehydrogenase  45.31 
 
 
253 aa  125  7e-28  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6823  short-chain dehydrogenase/reductase SDR  39.79 
 
 
258 aa  124  2e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2681  short chain dehydrogenase  39.8 
 
 
263 aa  123  3e-27  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2639  short chain dehydrogenase  39.8 
 
 
263 aa  123  3e-27  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2811  short chain dehydrogenase  39.8 
 
 
263 aa  123  3e-27  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6830  oxidoreductase  42.63 
 
 
265 aa  123  3e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.356358 
 
 
-
 
NC_011083  SeHA_C2705  short chain dehydrogenase  39.8 
 
 
263 aa  123  3e-27  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.856225  normal 
 
 
-
 
NC_011149  SeAg_B2590  short chain dehydrogenase  39.8 
 
 
263 aa  123  3e-27  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3753  short chain dehydrogenase  40.74 
 
 
294 aa  122  5e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0637159 
 
 
-
 
NC_010501  PputW619_1425  short chain dehydrogenase  44.27 
 
 
253 aa  122  7e-27  Pseudomonas putida W619  Bacteria  normal  0.857979  normal  0.357324 
 
 
-
 
NC_011060  Ppha_1918  short-chain dehydrogenase/reductase SDR  41.79 
 
 
280 aa  122  7e-27  Pelodictyon phaeoclathratiforme BU-1  Bacteria  hitchhiker  0.000963224  n/a   
 
 
-
 
NC_008726  Mvan_0852  short-chain dehydrogenase/reductase SDR  44.02 
 
 
286 aa  122  8e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.068211 
 
 
-
 
NC_013169  Ksed_19760  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  40.19 
 
 
256 aa  122  9e-27  Kytococcus sedentarius DSM 20547  Bacteria  decreased coverage  0.000927245  normal  0.0200652 
 
 
-
 
NC_009767  Rcas_3851  short-chain dehydrogenase/reductase SDR  39.46 
 
 
256 aa  121  9.999999999999999e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.575902  normal  0.466968 
 
 
-
 
NC_009338  Mflv_4505  short-chain dehydrogenase/reductase SDR  43.24 
 
 
260 aa  121  9.999999999999999e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_12680  short chain dehydrogenase  40.82 
 
 
278 aa  120  1.9999999999999998e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0783  short-chain dehydrogenase/reductase SDR  41.74 
 
 
298 aa  120  3e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2581  short chain dehydrogenase  38.78 
 
 
263 aa  120  3e-26  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3482  3-hydroxybutyrate dehydrogenase  35.24 
 
 
261 aa  120  3e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.059744  normal  0.189597 
 
 
-
 
NC_011658  BCAH187_A2719  short chain dehydrogenase family protein  35.26 
 
 
273 aa  120  3e-26  Bacillus cereus AH187  Bacteria  normal  0.272681  n/a   
 
 
-
 
NC_010172  Mext_4730  3-hydroxybutyrate dehydrogenase  34.62 
 
 
261 aa  120  3e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2956  short-chain dehydrogenase/reductase SDR  38.89 
 
 
295 aa  120  3e-26  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.5257  n/a   
 
 
-
 
NC_011757  Mchl_5197  3-hydroxybutyrate dehydrogenase  34.62 
 
 
261 aa  120  3e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.426896 
 
 
-
 
NC_009092  Shew_2863  short-chain dehydrogenase/reductase SDR  41.03 
 
 
248 aa  119  3.9999999999999996e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4406  short-chain dehydrogenase/reductase SDR  42.41 
 
 
253 aa  119  3.9999999999999996e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.410481  normal 
 
 
-
 
NC_009439  Pmen_3735  short chain dehydrogenase  35.71 
 
 
281 aa  119  3.9999999999999996e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3281  short-chain dehydrogenase/reductase SDR  39.09 
 
 
248 aa  119  4.9999999999999996e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.846295 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  42.08 
 
 
249 aa  119  4.9999999999999996e-26  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_009512  Pput_3969  short chain dehydrogenase  41.67 
 
 
269 aa  119  4.9999999999999996e-26  Pseudomonas putida F1  Bacteria  normal  normal  0.246181 
 
 
-
 
NC_008146  Mmcs_4577  short chain dehydrogenase  36.84 
 
 
253 aa  119  7e-26  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2215  short chain dehydrogenase  36.41 
 
 
276 aa  119  7e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4960  short chain dehydrogenase  36.84 
 
 
253 aa  119  7e-26  Mycobacterium sp. JLS  Bacteria  normal  0.599873  normal  0.483357 
 
 
-
 
NC_008705  Mkms_4665  short chain dehydrogenase  36.84 
 
 
253 aa  119  7e-26  Mycobacterium sp. KMS  Bacteria  normal  0.302874  normal 
 
 
-
 
CP001509  ECD_02326  short chain dehydrogenase  38.27 
 
 
263 aa  117  9.999999999999999e-26  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1235  short-chain dehydrogenase/reductase SDR  38.27 
 
 
263 aa  118  9.999999999999999e-26  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1665  3-hydroxybutyrate dehydrogenase  35.64 
 
 
256 aa  117  9.999999999999999e-26  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2798  short chain dehydrogenase  38.27 
 
 
263 aa  118  9.999999999999999e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1253  short chain dehydrogenase  38.27 
 
 
263 aa  118  9.999999999999999e-26  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0560735 
 
 
-
 
NC_012892  B21_02287  hypothetical protein  38.27 
 
 
263 aa  117  9.999999999999999e-26  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3286  3-hydroxybutyrate dehydrogenase  36.45 
 
 
256 aa  117  9.999999999999999e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3079  3-hydroxybutyrate dehydrogenase  37.13 
 
 
257 aa  117  9.999999999999999e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2865  short-chain dehydrogenase/reductase SDR  42.33 
 
 
255 aa  117  9.999999999999999e-26  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2712  short chain dehydrogenase  38.27 
 
 
263 aa  118  9.999999999999999e-26  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_38590  3-hydroxybutyrate dehydrogenase  36.45 
 
 
256 aa  118  9.999999999999999e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0379215  normal 
 
 
-
 
NC_011353  ECH74115_3656  short chain dehydrogenase  38.27 
 
 
263 aa  118  9.999999999999999e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2562  short chain dehydrogenase  38.27 
 
 
263 aa  118  9.999999999999999e-26  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00920  short-chain dehydrogenase/oxidoreductase  38.19 
 
 
295 aa  118  9.999999999999999e-26  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1745  short chain dehydrogenase  41.15 
 
 
269 aa  117  1.9999999999999998e-25  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2070  short-chain dehydrogenase/reductase SDR  43.92 
 
 
275 aa  117  1.9999999999999998e-25  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0241632 
 
 
-
 
NC_013730  Slin_5557  short-chain dehydrogenase/reductase SDR  34.26 
 
 
272 aa  117  1.9999999999999998e-25  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3000  short-chain dehydrogenase/reductase SDR  38.07 
 
 
248 aa  117  1.9999999999999998e-25  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.767749  normal  0.280666 
 
 
-
 
NC_012669  Bcav_2143  short-chain dehydrogenase/reductase SDR  36.89 
 
 
251 aa  117  1.9999999999999998e-25  Beutenbergia cavernae DSM 12333  Bacteria  decreased coverage  0.00162277  normal 
 
 
-
 
NC_009439  Pmen_1244  short chain dehydrogenase  41.05 
 
 
270 aa  117  1.9999999999999998e-25  Pseudomonas mendocina ymp  Bacteria  normal  0.542872  normal  0.404553 
 
 
-
 
NC_003909  BCE_2681  short chain dehydrogenase family protein  34.74 
 
 
273 aa  117  3e-25  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00380586  n/a   
 
 
-
 
NC_010501  PputW619_1295  short chain dehydrogenase  40.62 
 
 
271 aa  116  3e-25  Pseudomonas putida W619  Bacteria  normal  0.657463  normal 
 
 
-
 
NC_007908  Rfer_0646  short-chain dehydrogenase/reductase SDR  37.33 
 
 
256 aa  117  3e-25  Rhodoferax ferrireducens T118  Bacteria  normal  0.965194  n/a   
 
 
-
 
NC_007948  Bpro_2705  3-hydroxybutyrate dehydrogenase  37.25 
 
 
260 aa  117  3e-25  Polaromonas sp. JS666  Bacteria  normal  0.0392543  normal  0.0560385 
 
 
-
 
NC_009077  Mjls_2741  short-chain dehydrogenase/reductase SDR  38.86 
 
 
245 aa  116  3e-25  Mycobacterium sp. JLS  Bacteria  normal  0.67028  normal  0.072064 
 
 
-
 
NC_009338  Mflv_3370  short-chain dehydrogenase/reductase SDR  39.69 
 
 
285 aa  117  3e-25  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.976299 
 
 
-
 
NC_008148  Rxyl_3193  short chain dehydrogenase  39.27 
 
 
255 aa  116  3e-25  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2914  short chain dehydrogenase  36.46 
 
 
255 aa  116  3e-25  Trichodesmium erythraeum IMS101  Bacteria  normal  0.892644  normal  0.135282 
 
 
-
 
NC_010322  PputGB1_1337  short chain dehydrogenase  39.68 
 
 
269 aa  116  3.9999999999999997e-25  Pseudomonas putida GB-1  Bacteria  normal  normal  0.950533 
 
 
-
 
NC_009524  PsycPRwf_1005  short-chain dehydrogenase/reductase SDR  37.04 
 
 
260 aa  116  3.9999999999999997e-25  Psychrobacter sp. PRwf-1  Bacteria  normal  hitchhiker  0.0000302146 
 
 
-
 
NC_013172  Bfae_29820  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  37.66 
 
 
261 aa  116  3.9999999999999997e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5156  short chain dehydrogenase  39.9 
 
 
254 aa  116  5e-25  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.215894  normal 
 
 
-
 
NC_008705  Mkms_2755  short-chain dehydrogenase/reductase SDR  38.34 
 
 
245 aa  115  5e-25  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_3076  short-chain dehydrogenase/reductase SDR  35.92 
 
 
285 aa  115  5e-25  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2711  short-chain dehydrogenase/reductase SDR  38.34 
 
 
245 aa  115  5e-25  Mycobacterium sp. MCS  Bacteria  normal  0.561182  n/a   
 
 
-
 
NC_008463  PA14_21640  short chain dehydrogenase  41.8 
 
 
270 aa  116  5e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_36670  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  39.51 
 
 
252 aa  115  6.9999999999999995e-25  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_1601  short chain dehydrogenase  40.41 
 
 
253 aa  115  6.9999999999999995e-25  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.786043  normal 
 
 
-
 
NC_004578  PSPTO_1627  oxidoreductase, short chain dehydrogenase/reductase family  39.15 
 
 
271 aa  115  7.999999999999999e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0861444  n/a   
 
 
-
 
NC_010725  Mpop_5269  3-hydroxybutyrate dehydrogenase  32.69 
 
 
261 aa  115  8.999999999999998e-25  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1249  short-chain dehydrogenase/reductase SDR  38.6 
 
 
273 aa  115  1.0000000000000001e-24  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0626824  n/a   
 
 
-
 
NC_009636  Smed_1274  short-chain dehydrogenase/reductase SDR  38.1 
 
 
251 aa  114  1.0000000000000001e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.062755  normal 
 
 
-
 
NC_007511  Bcep18194_B3036  Short-chain dehydrogenase/reductase SDR  39.71 
 
 
252 aa  114  1.0000000000000001e-24  Burkholderia sp. 383  Bacteria  normal  0.0329583  normal 
 
 
-
 
NC_012560  Avin_41710  Short-chain dehydrogenase/reductase SDR  41.36 
 
 
264 aa  114  1.0000000000000001e-24  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3326  short-chain dehydrogenase/reductase SDR  36.89 
 
 
249 aa  114  1.0000000000000001e-24  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.999176  normal 
 
 
-
 
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