| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2956 |
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| Symbol | |
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| ID | 4174724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3580005 |
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| End bp | 3580892 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638055979 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_662518 |
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| Protein GI | 109899263 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.5257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAATG AATTTACAGG TAAAACAGCC ATCATCTCAG GTGCTGCTGG TGGGATAGGT
CTCGCTTTAG CCGAAGCCTT AGGCAAACAG GGCATGAATA TTGTTATGGG TGACATTGAT
ATTCAGGCGT TGGCGGTATC TAGACAGTCA CTGCTAGACA AGGGCGTCAA TGTGCTGGCC
TGTGAATTAG ACGTGACAGA TTATAAGCAA TGGGAAGACG TAGTCGCTCG GGCGAAAGAT
ACCTATGGCA AGGTGCACAT GGTGATTAAT AATGCTGGTG TGGGCGGTAT CCCCGGTAAG
ATTGAAGATA CTGAACACGA AACGTGGCGC TGGGTAATGG ATGTTAACGT CATGGGCGTT
CTGTACGGTG CGCAGGCGTG TGTGCCTGCC ATAAAAGAGC ATGGTGAAGG GGGCTGGGTC
GTTAATGTAG CCTCTATGGC CGGCATGCTG GGGATGCCTT ATGCCGGAGC GTACTGCGCC
TCAAAAGCGG CCGTAGTGTC TATGACAGAA AGCTGGGCAG TAGAGCTTGC ACCGCACAAT
ATTCACGTGT CGGCGTTGTG CCCTGCATTT GTAAAAACTC GCATTCACGA ATCTCATCGT
AATCGACAAG AAAAATACGC GGTTGCCCCC GCAGATCGCC AAGATAAAAA GAAATTACAA
GCAGGCGCTA ATGCTGCGAC TTTGGCTGTA GAGTCGGGCA TACCCGCTGG CGTACTTGCA
CAGCGCGTGC TGGAAGCTCT GAAGTCAAAG CAGACTTATA TTTATACTCA TCCGAATTAC
CGTAAGGTGA CAAGTGGTCG TTCAAAAGCA ATTGACAAGG CCTTTGTTGA TGCCCAAGAA
AGCCCAGTTG TAGGCCACTT GATTGATGAA GAAATAGTGA CTTTCTAA
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| Protein sequence | MSNEFTGKTA IISGAAGGIG LALAEALGKQ GMNIVMGDID IQALAVSRQS LLDKGVNVLA
CELDVTDYKQ WEDVVARAKD TYGKVHMVIN NAGVGGIPGK IEDTEHETWR WVMDVNVMGV
LYGAQACVPA IKEHGEGGWV VNVASMAGML GMPYAGAYCA SKAAVVSMTE SWAVELAPHN
IHVSALCPAF VKTRIHESHR NRQEKYAVAP ADRQDKKKLQ AGANAATLAV ESGIPAGVLA
QRVLEALKSK QTYIYTHPNY RKVTSGRSKA IDKAFVDAQE SPVVGHLIDE EIVTF
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