More than 300 homologs were found in PanDaTox collection
for query gene VSAL_II0360 on replicon NC_011313
Organism: Aliivibrio salmonicida LFI1238



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011313  VSAL_II0360  HTH-type transcriptional regulator, LysR-family  100 
 
 
301 aa  618  1e-176  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.132599  n/a   
 
 
-
 
NC_009831  Ssed_3988  putative transcriptional regulator SyrB  46.13 
 
 
301 aa  278  1e-73  Shewanella sediminis HAW-EB3  Bacteria  normal  0.859636  normal 
 
 
-
 
NC_009901  Spea_3428  LysR family transcriptional regulator  29.35 
 
 
303 aa  132  6e-30  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00000186024  n/a   
 
 
-
 
NC_013457  VEA_000892  transcriptional regulators LysR family  27.15 
 
 
304 aa  114  2.0000000000000002e-24  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05276  transcriptional regulator  24.4 
 
 
313 aa  105  8e-22  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I2445  HTH-type transcriptional regulator, LysR family  26.71 
 
 
308 aa  91.7  1e-17  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.333927  n/a   
 
 
-
 
NC_007778  RPB_1974  LysR family transcriptional regulator  22.79 
 
 
317 aa  85.5  0.000000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008538  Arth_4269  LysR family transcriptional regulator  36.44 
 
 
301 aa  83.2  0.000000000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2311  LysR family transcriptional regulator  23.68 
 
 
316 aa  80.9  0.00000000000003  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00615396  normal 
 
 
-
 
NC_007958  RPD_3412  regulatory protein, LysR  22.11 
 
 
317 aa  80.5  0.00000000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.366877  normal 
 
 
-
 
NC_010086  Bmul_5074  LysR family transcriptional regulator  22.92 
 
 
306 aa  80.1  0.00000000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.322448 
 
 
-
 
NC_012850  Rleg_0820  transcriptional regulator, LysR family  21.53 
 
 
310 aa  79.3  0.00000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.24868  normal 
 
 
-
 
NC_007641  Rru_B0017  LysR family transcriptional regulator  24.69 
 
 
301 aa  79.3  0.00000000000007  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3501  LysR family transcriptional regulator  23.29 
 
 
301 aa  79.3  0.00000000000008  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.356591  normal 
 
 
-
 
NC_010676  Bphyt_6114  transcriptional regulator, LysR family  23.76 
 
 
316 aa  78.6  0.0000000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.689302  normal 
 
 
-
 
NC_009832  Spro_2994  LysR family transcriptional regulator  22.04 
 
 
310 aa  77  0.0000000000003  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_00508  transcriptional regulator  26.29 
 
 
308 aa  77  0.0000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_2331  LysR family transcriptional regulator  22.64 
 
 
307 aa  77  0.0000000000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4311  transcriptional regulator, LysR family  24.29 
 
 
309 aa  77  0.0000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.386764  normal  0.967846 
 
 
-
 
NC_009439  Pmen_1145  LysR family transcriptional regulator  24.67 
 
 
304 aa  76.6  0.0000000000004  Pseudomonas mendocina ymp  Bacteria  normal  0.610214  normal  0.415034 
 
 
-
 
NC_008345  Sfri_0794  transcriptional regulator, LysR family protein  22.74 
 
 
301 aa  76.3  0.0000000000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0257  LysR family transcriptional regulator  22.22 
 
 
331 aa  75.1  0.000000000001  Burkholderia sp. 383  Bacteria  normal  normal  0.885703 
 
 
-
 
NC_007952  Bxe_B0642  LysR family transcriptional regulator  24.77 
 
 
309 aa  75.5  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.915851  normal  0.108834 
 
 
-
 
NC_003910  CPS_0420  LysR family transcriptional regulator  26.47 
 
 
309 aa  74.7  0.000000000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01325  transcriptional regulator, LysR family protein  28.8 
 
 
314 aa  74.7  0.000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0111496  n/a   
 
 
-
 
NC_010581  Bind_2635  LysR family transcriptional regulator  22.74 
 
 
297 aa  74.3  0.000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3500  LysR family transcriptional regulator  27.82 
 
 
313 aa  74.3  0.000000000002  Shewanella putrefaciens CN-32  Bacteria  normal  0.0910886  n/a   
 
 
-
 
NC_009457  VC0395_A2446  LysR family transcriptional regulator  25.08 
 
 
327 aa  74.3  0.000000000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1485  LysR family transcriptional regulator  23.53 
 
 
314 aa  74.3  0.000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.397513  normal 
 
 
-
 
NC_008739  Maqu_4108  LysR family transcriptional regulator  25.08 
 
 
312 aa  73.9  0.000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4508  LysR family transcriptional regulator  21.69 
 
 
306 aa  73.9  0.000000000003  Polaromonas sp. JS666  Bacteria  normal  0.872153  normal  0.61755 
 
 
-
 
NC_013457  VEA_000752  transcriptional regulator  21.38 
 
 
276 aa  73.6  0.000000000004  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00374891  n/a   
 
 
-
 
NC_010515  Bcenmc03_4479  LysR family transcriptional regulator  21.2 
 
 
308 aa  73.6  0.000000000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5744  LysR family transcriptional regulator  20.89 
 
 
308 aa  73.6  0.000000000004  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.205378 
 
 
-
 
NC_011662  Tmz1t_2999  transcriptional regulator, LysR family  22.07 
 
 
333 aa  73.6  0.000000000004  Thauera sp. MZ1T  Bacteria  normal  0.4449  n/a   
 
 
-
 
NC_009901  Spea_4020  LysR family transcriptional regulator  25.2 
 
 
324 aa  73.2  0.000000000005  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2206  LysR family transcriptional regulator  26.1 
 
 
300 aa  73.2  0.000000000006  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1167  LysR family transcriptional regulator  22.7 
 
 
309 aa  72.8  0.000000000006  Vibrio cholerae O395  Bacteria  normal  0.136839  n/a   
 
 
-
 
NC_008061  Bcen_5115  LysR family transcriptional regulator  20.89 
 
 
308 aa  73.2  0.000000000006  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.337357  n/a   
 
 
-
 
NC_009075  BURPS668_A0065  LysR family transcriptional regulator  22.57 
 
 
307 aa  72.8  0.000000000007  Burkholderia pseudomallei 668  Bacteria  normal  0.363781  n/a   
 
 
-
 
NC_010623  Bphy_4455  LysR family transcriptional regulator  24.24 
 
 
307 aa  72.8  0.000000000007  Burkholderia phymatum STM815  Bacteria  normal  normal  0.326178 
 
 
-
 
NC_007963  Csal_0307  LysR family transcriptional regulator  21.19 
 
 
308 aa  72.8  0.000000000007  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.291876  n/a   
 
 
-
 
NC_008321  Shewmr4_2072  LysR family transcriptional regulator  21.4 
 
 
305 aa  72.8  0.000000000007  Shewanella sp. MR-4  Bacteria  normal  0.0341772  normal  0.872543 
 
 
-
 
NC_009524  PsycPRwf_0737  LysR family transcriptional regulator  23.05 
 
 
302 aa  72  0.00000000001  Psychrobacter sp. PRwf-1  Bacteria  normal  hitchhiker  0.000210121 
 
 
-
 
NC_009656  PSPA7_5625  putative transcriptional regulator  19.86 
 
 
298 aa  72  0.00000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.290257  n/a   
 
 
-
 
NC_012792  Vapar_5350  transcriptional regulator, LysR family  22.48 
 
 
304 aa  72  0.00000000001  Variovorax paradoxus S110  Bacteria  normal  0.57185  n/a   
 
 
-
 
NC_009784  VIBHAR_04895  transcriptional regulator  22.85 
 
 
296 aa  71.6  0.00000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_64780  putative transcriptional regulator  19.86 
 
 
298 aa  70.9  0.00000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.166653  normal 
 
 
-
 
NC_011663  Sbal223_0216  transcriptional regulator, LysR family  26.46 
 
 
313 aa  71.2  0.00000000002  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000946054  normal  0.293728 
 
 
-
 
NC_009078  BURPS1106A_A0052  LysR family transcriptional regulator  22.57 
 
 
307 aa  71.6  0.00000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1198  LysR family transcriptional regulator  22.57 
 
 
307 aa  71.6  0.00000000002  Burkholderia mallei SAVP1  Bacteria  normal  0.601339  n/a   
 
 
-
 
NC_006349  BMAA0044  LysR family transcriptional regulator  22.57 
 
 
307 aa  71.6  0.00000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1583  regulatory protein, LysR:LysR, substrate-binding  25.32 
 
 
323 aa  71.6  0.00000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3932  transcriptional regulator  25.53 
 
 
311 aa  71.2  0.00000000002  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00420556  normal 
 
 
-
 
NC_007435  BURPS1710b_A1550  LysR family transcriptional regulator  22.57 
 
 
307 aa  71.6  0.00000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5526  LysR family transcriptional regulator  24.73 
 
 
306 aa  71.2  0.00000000002  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3131  LysR family transcriptional regulator  20.89 
 
 
308 aa  71.2  0.00000000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3988  LysR family transcriptional regulator  23.32 
 
 
324 aa  71.2  0.00000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0054  LysR family transcriptional regulator  22.57 
 
 
307 aa  71.6  0.00000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1481  LysR family transcriptional regulator  22.57 
 
 
308 aa  71.2  0.00000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5461  transcriptional regulator, LysR family  38.67 
 
 
325 aa  70.9  0.00000000002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1903  LysR family transcriptional regulator  21.07 
 
 
305 aa  71.2  0.00000000002  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_4244  LysR family transcriptional regulator  26.46 
 
 
313 aa  70.5  0.00000000003  Shewanella baltica OS195  Bacteria  unclonable  0.000000170817  hitchhiker  0.00215615 
 
 
-
 
NC_009665  Shew185_4123  LysR family transcriptional regulator  26.46 
 
 
313 aa  70.5  0.00000000003  Shewanella baltica OS185  Bacteria  hitchhiker  0.000527418  n/a   
 
 
-
 
NC_008321  Shewmr4_3734  LysR family transcriptional regulator  24.82 
 
 
311 aa  70.5  0.00000000003  Shewanella sp. MR-4  Bacteria  normal  normal  0.457361 
 
 
-
 
NC_008322  Shewmr7_3805  LysR family transcriptional regulator  24.82 
 
 
311 aa  70.9  0.00000000003  Shewanella sp. MR-7  Bacteria  normal  0.829403  normal 
 
 
-
 
NC_010501  PputW619_3150  LysR family transcriptional regulator  22.52 
 
 
299 aa  70.1  0.00000000004  Pseudomonas putida W619  Bacteria  normal  0.266522  normal 
 
 
-
 
NC_012850  Rleg_1036  transcriptional regulator, LysR family  34.75 
 
 
320 aa  70.1  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0214  LysR family transcriptional regulator  30.85 
 
 
313 aa  69.7  0.00000000005  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000152565  n/a   
 
 
-
 
NC_008463  PA14_68550  LysR family transcriptional regulator  22.22 
 
 
302 aa  69.7  0.00000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.505107 
 
 
-
 
NC_011365  Gdia_1717  transcriptional regulator, LysR family  28.8 
 
 
323 aa  69.3  0.00000000008  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3690  LysR family transcriptional regulator  24.73 
 
 
306 aa  68.9  0.00000000009  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.996067 
 
 
-
 
NC_009921  Franean1_6632  LysR family transcriptional regulator  25.38 
 
 
310 aa  68.9  0.00000000009  Frankia sp. EAN1pec  Bacteria  normal  0.946509  normal 
 
 
-
 
NC_010552  BamMC406_3156  LysR family transcriptional regulator  21.36 
 
 
308 aa  68.9  0.00000000009  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0902  transcriptional regulator, LysR family  34.75 
 
 
321 aa  68.9  0.00000000009  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5282  LysR family transcriptional regulator  22.38 
 
 
310 aa  68.9  0.00000000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.560852  normal 
 
 
-
 
NC_002947  PP_1270  LysR family transcriptional regulator  24.02 
 
 
301 aa  68.6  0.0000000001  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1118  LysR family transcriptional regulator  21.28 
 
 
298 aa  68.9  0.0000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5932  putative transcriptional regulator  21.36 
 
 
302 aa  68.6  0.0000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5290  LysR family transcriptional regulator  21.17 
 
 
327 aa  68.6  0.0000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4525.1  LysR family transcriptional regulator  30.32 
 
 
243 aa  68.6  0.0000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008391  Bamb_5015  LysR family transcriptional regulator  21.36 
 
 
308 aa  68.9  0.0000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.357265  normal 
 
 
-
 
NC_009665  Shew185_4139  LysR family transcriptional regulator  22.88 
 
 
323 aa  68.6  0.0000000001  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2055  transcriptional regulator, LysR family  25.76 
 
 
325 aa  68.6  0.0000000001  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0044  LysR family transcriptional regulator  23.58 
 
 
307 aa  68.9  0.0000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00357  transcriptional regulator  30.21 
 
 
323 aa  68.6  0.0000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007974  Rmet_5360  putative LysR family transcriptional regulator  29.13 
 
 
331 aa  68.6  0.0000000001  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00393465  normal 
 
 
-
 
NC_013457  VEA_000551  transcriptional regulator  22.45 
 
 
304 aa  68.6  0.0000000001  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_4622  LysR family transcriptional regulator  25.98 
 
 
314 aa  68.9  0.0000000001  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_4276  LysR family transcriptional regulator  26.71 
 
 
309 aa  67.8  0.0000000002  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.580603 
 
 
-
 
NC_009654  Mmwyl1_1311  LysR family transcriptional regulator  27.62 
 
 
321 aa  68.2  0.0000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.20499  normal  0.840284 
 
 
-
 
NC_003296  RS05202  transcription regulator protein  20.14 
 
 
304 aa  67.8  0.0000000002  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.0000103081  normal  0.0105317 
 
 
-
 
NC_007005  Psyr_2473  regulatory protein, LysR:LysR, substrate-binding  19.79 
 
 
309 aa  68.2  0.0000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.470422  normal  0.100008 
 
 
-
 
NC_009831  Ssed_0253  LysR family transcriptional regulator  23.95 
 
 
320 aa  68.2  0.0000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0459  transcriptional regulator, LysR family  25.39 
 
 
308 aa  67.8  0.0000000002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  hitchhiker  0.00764777  normal  0.120091 
 
 
-
 
NC_010682  Rpic_2448  transcriptional regulator, LysR family  25.32 
 
 
325 aa  67.8  0.0000000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0871  LysR family transcriptional regulator  23.95 
 
 
302 aa  67.8  0.0000000002  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3209  LysR family transcriptional regulator  23.79 
 
 
312 aa  68.2  0.0000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.487782 
 
 
-
 
NC_011312  VSAL_I2971  HTH-type transcriptional regulator, LysR family  24.36 
 
 
313 aa  67.4  0.0000000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.554453  n/a   
 
 
-
 
NC_010524  Lcho_0801  LysR family transcriptional regulator  21.38 
 
 
309 aa  67  0.0000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
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