| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1118 |
|---|
| Symbol | |
|---|
| ID | 5661517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1355486 |
|---|
| End bp | 1356382 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641235670 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001500980 |
|---|
| Protein GI | 157960946 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGGGG CTTTGAATAG AAATATTTCT GATTTGAATC AAATCAGGTT GTTACTGGAT
TTAGTTCATA CTAAAAACAT GAGCCGCACC GCACAGCGCT TAGGTAAAAC AACCAGTGCT
ATATCTAAAA ACTTGCAGCG ACTGCGTGAA GAGCTTTGCG ACCCCCTCTT TATTAGGCAG
CCATCAGGAC TAGAGCCGAC GACATACGCC TTAACTCTTA CCGCTAAACT GACTAATATT
CAAAAGGATA TCGATGCAGC CTTCGATTCT GAGTCATTCG ATCCTAAGTT ATTTAAAGGT
AAAATCACCT TAGCTGCGAA TACGGCGTTA ATGCACCAAT ATCAGGGGGA ACTATTACTC
GCGTTAACAG AGCAGGCGCC GCTGGCCAAT ATTGAAATTG TCCAATGGCA AGAGGATAGT
TATCAGAGAA TACTCGATGG CAGTATTAAT GCAGGCCTAC AATTTTTGAA TGAGAATTGC
ACTCAATCTA TTATGCAGCA TGTTCTTCAA AGGCATGAGA TTGTGCTAGT CACTGGTGGC
AAGCATAGTG CATCAAGCGC AAGAGAGGCC TTATCATCTC CCTTAGCAGT GCTTAAGATC
CATGGTTGGA ATGCTGACTC GGTTCGCTTT TCTCGCTACC TCTATCAGAA GGGGGTAGAG
CATAATGTGC GTTTGCAGTG TGAAGATCTT CCTAGCCTAT TATCATGCCT TGAGCGCAGT
AATTTTGTCT CTCCGTTACC ACGCTTCCTA TGTCCAGGTA ACTTAAAAGC GCTTACCTTA
GATGAGCCGG GTAATGAGAT AAGCTCAGTG GTGTGTATCC CCTCTACTCA TAGAAACGAG
CCACTGTATC AATGGCTCGT AGGACTCATT AAATCACTAA TGCCAGTAAA GTTGTGA
|
|---|
| Protein sequence | MGGALNRNIS DLNQIRLLLD LVHTKNMSRT AQRLGKTTSA ISKNLQRLRE ELCDPLFIRQ
PSGLEPTTYA LTLTAKLTNI QKDIDAAFDS ESFDPKLFKG KITLAANTAL MHQYQGELLL
ALTEQAPLAN IEIVQWQEDS YQRILDGSIN AGLQFLNENC TQSIMQHVLQ RHEIVLVTGG
KHSASSAREA LSSPLAVLKI HGWNADSVRF SRYLYQKGVE HNVRLQCEDL PSLLSCLERS
NFVSPLPRFL CPGNLKALTL DEPGNEISSV VCIPSTHRNE PLYQWLVGLI KSLMPVKL
|
|---|
| |