| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5461 |
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| Symbol | |
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| ID | 7975155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 162964 |
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| End bp | 163941 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796049 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947323 |
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| Protein GI | 239820138 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAGAA GCCAGGACCT TGTCGACATC CACCTGCTGC GCGTGCTGGC GGCACTGGTG
GCTGAGCGCA GCGTCTCGCG CGCCGCGGTA CGCATGAACC AGACGCAGCC GGCCATCAGC
GCGGCGCTGC GGCGCCTGCG CGACGCCTTC GGCGATCCGA TCCTGGTGCG CGAGCGCGGC
GGCATGGTGC CCACCGCGCG GGCGCTGCAG TTGCGCGAGA GCGCACGCGA GGTGCTGGGC
GAGATCGATC GCATGCTGGC CGGGCCGGAG CGCTTCGAGC CCGGCGCCAG CACCATGACC
TTCACCATCG CCACGCCGGA CTACCTGGCC GCCAGCTTCA TGGCCGAGGT GGTGGCGCGC
TTTCGCGCCG AGGCGCCGCA GGCGCGCCTG CTGATCCACC CGCTGACGCC CGGCTACGAC
TACGAGCGCG CACTGGCGCA GGGCGAGCTC GACATCGTGA TCGGCAACTG GCCGCTGCCG
CCCGAGCGCA TGCACCTGTC GCTGCTGATC GAGGACGAGC TGGTCTGCAT GATGAGTCCG
GGCAACCCGC TGGCCGCACC GGGCGCGATG ACGCTGCAGC GCTACCTGGC AGCCGCCCAC
GTGGTGCCCA CGCCGTTTGC CAAGTCGCAT CGCGCGGTGG TCGACAGCCA CCTGGCCGGG
CTGCGGCAAA CCCGCGATGC GCGCGTCTTC GTGCCCTACT ACGCCATGGC GCCCTACCTG
GTGGCCGAGA GCGACCTCGT GTTCACCACC GCGCGCCACT TTGCCGAGCA GTTCACGCGC
AGCCTGCCGG TGGTGAGCGT GGCGGCCCCC GAAGGATTTC CGCGCATGCG CTTCTACCAG
CTGTGGCACG AGCGCTCACA GCACCAGGGC GCGCATCGCT GGCTGCGCAG CCTGCTCTCG
ACGGTGGGCG GCCACCTGGC GCAGGCGGCG CCGGGATCGG CGAGCGGTCC ATCTGCAGGC
GGGACAATCG AGGAGTAG
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| Protein sequence | MTRSQDLVDI HLLRVLAALV AERSVSRAAV RMNQTQPAIS AALRRLRDAF GDPILVRERG
GMVPTARALQ LRESAREVLG EIDRMLAGPE RFEPGASTMT FTIATPDYLA ASFMAEVVAR
FRAEAPQARL LIHPLTPGYD YERALAQGEL DIVIGNWPLP PERMHLSLLI EDELVCMMSP
GNPLAAPGAM TLQRYLAAAH VVPTPFAKSH RAVVDSHLAG LRQTRDARVF VPYYAMAPYL
VAESDLVFTT ARHFAEQFTR SLPVVSVAAP EGFPRMRFYQ LWHERSQHQG AHRWLRSLLS
TVGGHLAQAA PGSASGPSAG GTIEE
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