| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3988 |
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| Symbol | |
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| ID | 5613519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4880602 |
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| End bp | 4881507 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934942 |
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| Product | putative transcriptional regulator SyrB |
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| Protein accession | YP_001475720 |
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| Protein GI | 157377120 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.859636 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTTGTCA TGTCGAACGA TTATAATTTA TTGCGCTTGC TATTGGTCTT AAATGAAACA
AGACAAACAG TGCAGGCCGC CAAAGCTTTA AATGTGAGTC AGCCAACCAT TAGCGTTATG
CTGAAAAAGC TACGTGAGCA GTTTAATGAT GAACTGTTCG TGCGCAGTAA AACTCAACTT
GAGCCCACAC CAAAGTGTTT AACGATCATT GCTAAACTAC CGGACTTACT TGAGCAGATG
GAACAGTTGT ACTTAGATGC AGAGGTGTGG AATATTGCCG ATATGTCTGG CGAGCTCAAG
TTGCTGCTTC CCTCCCCATT GATGGCTGTT ATCGGTGCGC CGCTTATTGG TAAGCTTACT
AAGCTCGCCC CTAAACTCAC CGTTGAGTGT GCTCATTGGG GCCACAATGC CGTACAACTG
CTAGAGCGCG ATCCTAAAGC TTGGGGAATA TCTTACTTGC CGATGGATAC CAATAAGGTT
TTATATCAGC GTGACCTTGG TTACGACAAG TTCATGTTAA TTATGCGTAA AGGCCATCCG
CTTCAAGACA ATACGCTTAC CGAAGTTCTC AACTATCCAA TCTGCGTTAA TACTATTCCA
GGTTACACTG AGCCCTCAAA GGCTGAAATG CTGATTAAGA AATATGACCT CGATGGACAT
ATCAACTTGC GCTGCAGTGA CATGAGCATG ATGCTCAAAC TGGTTAAAGA CAGCGATTTT
ATCTGCGTGG CTACTGAAAA ATGCGCTACT GTACTGGGGA ATGATTATCG CTATGAGGCG
TTACCTAGAG AGCTTTATAA GGATACCTTC AGACGCTCGT ACGCCTTATT TACCCATCAA
CGAAATCGAC ATAATCCATT AACGGACTGG CTAGAGCATG AAATCTTAGC CTTAATGAAC
GAATAG
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| Protein sequence | MVVMSNDYNL LRLLLVLNET RQTVQAAKAL NVSQPTISVM LKKLREQFND ELFVRSKTQL
EPTPKCLTII AKLPDLLEQM EQLYLDAEVW NIADMSGELK LLLPSPLMAV IGAPLIGKLT
KLAPKLTVEC AHWGHNAVQL LERDPKAWGI SYLPMDTNKV LYQRDLGYDK FMLIMRKGHP
LQDNTLTEVL NYPICVNTIP GYTEPSKAEM LIKKYDLDGH INLRCSDMSM MLKLVKDSDF
ICVATEKCAT VLGNDYRYEA LPRELYKDTF RRSYALFTHQ RNRHNPLTDW LEHEILALMN
E
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