More than 300 homologs were found in PanDaTox collection
for query gene SO_1416 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004347  SO_1416  DNA-binding response regulator  100 
 
 
199 aa  404  1.0000000000000001e-112  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_2282  two component LuxR family transcriptional regulator  62.81 
 
 
199 aa  256  2e-67  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.203996 
 
 
-
 
NC_009901  Spea_2088  two component LuxR family transcriptional regulator  58.29 
 
 
199 aa  232  2.0000000000000002e-60  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2399  response regulator receiver protein  52.5 
 
 
201 aa  213  9.999999999999999e-55  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.635003 
 
 
-
 
NC_009092  Shew_1969  two component LuxR family transcriptional regulator  59.49 
 
 
199 aa  209  2e-53  Shewanella loihica PV-4  Bacteria  normal  normal  0.0986563 
 
 
-
 
NC_009901  Spea_3041  two component LuxR family transcriptional regulator  43.46 
 
 
203 aa  165  5e-40  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0609  two component LuxR family transcriptional regulator  43.92 
 
 
199 aa  160  9e-39  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_4067  two component LuxR family transcriptional regulator  42.86 
 
 
209 aa  158  6e-38  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2788  response regulator FixJ  38.42 
 
 
205 aa  156  2e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0210669  normal  0.0766422 
 
 
-
 
NC_007298  Daro_2996  LuxR response regulator receiver  41.33 
 
 
198 aa  155  3e-37  Dechloromonas aromatica RCB  Bacteria  normal  0.437807  normal 
 
 
-
 
NC_008577  Shewana3_0637  two component LuxR family transcriptional regulator  42.02 
 
 
203 aa  155  4e-37  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.0000059529 
 
 
-
 
NC_012791  Vapar_2160  two component transcriptional regulator, LuxR family  39.15 
 
 
210 aa  155  4e-37  Variovorax paradoxus S110  Bacteria  normal  0.563306  n/a   
 
 
-
 
NC_007964  Nham_1906  response regulator FixJ  42.11 
 
 
205 aa  155  4e-37  Nitrobacter hamburgensis X14  Bacteria  normal  0.700153  n/a   
 
 
-
 
NC_013456  VEA_003036  tetrathionate reductase two-component response regulator  42.78 
 
 
200 aa  155  4e-37  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0436  two component LuxR family transcriptional regulator  40.21 
 
 
202 aa  154  6e-37  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4157  DNA-binding response regulator  39.8 
 
 
202 aa  154  1e-36  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010002  Daci_3982  two component LuxR family transcriptional regulator  39.68 
 
 
216 aa  154  1e-36  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0179399 
 
 
-
 
NC_007958  RPD_1342  response regulator FixJ  37.37 
 
 
205 aa  153  1e-36  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.400465  normal 
 
 
-
 
NC_008321  Shewmr4_0637  two component LuxR family transcriptional regulator  40.96 
 
 
203 aa  153  2e-36  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.0000207768 
 
 
-
 
NC_007973  Rmet_1194  two component LuxR family transcriptional regulator  38.42 
 
 
210 aa  152  2.9999999999999998e-36  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00813352  normal  0.892025 
 
 
-
 
NC_008577  Shewana3_3697  two component LuxR family transcriptional regulator  39.69 
 
 
201 aa  152  5e-36  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2127  two component LuxR family transcriptional regulator  38.62 
 
 
208 aa  151  5.9999999999999996e-36  Acidovorax sp. JS42  Bacteria  normal  0.583598  normal  0.797665 
 
 
-
 
NC_011992  Dtpsy_1655  two component transcriptional regulator, LuxR family  38.62 
 
 
208 aa  151  5.9999999999999996e-36  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4653  two component LuxR family transcriptional regulator  40.3 
 
 
209 aa  151  5.9999999999999996e-36  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4053  response regulator FixJ  37.37 
 
 
205 aa  151  7e-36  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3108  LuxR response regulator receiver  41.18 
 
 
202 aa  151  8e-36  Dechloromonas aromatica RCB  Bacteria  normal  0.786061  normal 
 
 
-
 
NC_011662  Tmz1t_3400  two component transcriptional regulator, LuxR family  39.06 
 
 
201 aa  150  8e-36  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0467  two component LuxR family transcriptional regulator  39.18 
 
 
200 aa  150  2e-35  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0451  response regulator receiver protein  39.18 
 
 
200 aa  150  2e-35  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2130  two component LuxR family transcriptional regulator  38.5 
 
 
207 aa  149  2e-35  Methylibium petroleiphilum PM1  Bacteria  normal  0.281977  normal 
 
 
-
 
NC_007948  Bpro_2674  two component LuxR family transcriptional regulator  37.57 
 
 
208 aa  149  2e-35  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3240  two component LuxR family transcriptional regulator  38.62 
 
 
207 aa  149  3e-35  Shewanella loihica PV-4  Bacteria  normal  normal  0.989265 
 
 
-
 
NC_008786  Veis_1921  response regulator receiver protein  37.43 
 
 
208 aa  149  3e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.287441  normal  0.0849999 
 
 
-
 
NC_008752  Aave_2460  two component LuxR family transcriptional regulator  37.76 
 
 
208 aa  149  3e-35  Acidovorax citrulli AAC00-1  Bacteria  normal  0.293905  normal 
 
 
-
 
NC_008781  Pnap_1779  response regulator receiver protein  39.15 
 
 
208 aa  149  3e-35  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.264941  hitchhiker  0.00228897 
 
 
-
 
NC_008786  Veis_4829  response regulator receiver protein  41.12 
 
 
209 aa  149  4e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.352064  normal  0.347274 
 
 
-
 
NC_009052  Sbal_3862  response regulator receiver protein  38.66 
 
 
200 aa  148  4e-35  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1028  response regulator FixJ  39.47 
 
 
205 aa  148  5e-35  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1363  response regulator FixJ  36.84 
 
 
205 aa  148  5e-35  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.433868  normal 
 
 
-
 
NC_008340  Mlg_1621  two component LuxR family transcriptional regulator  39.57 
 
 
201 aa  148  5e-35  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1644  two component LuxR family transcriptional regulator  38.5 
 
 
207 aa  148  6e-35  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0578076 
 
 
-
 
NC_009665  Shew185_3732  response regulator receiver protein  39.69 
 
 
206 aa  148  7e-35  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0666  response regulator receiver protein  40.21 
 
 
203 aa  147  7e-35  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0478  two component transcriptional regulator, LuxR family  38.66 
 
 
200 aa  147  7e-35  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3675  two component transcriptional regulator, LuxR family  39.69 
 
 
206 aa  147  8e-35  Shewanella baltica OS223  Bacteria  normal  0.241682  normal 
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  37.37 
 
 
210 aa  147  9e-35  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_011004  Rpal_4727  response regulator FixJ  37.89 
 
 
203 aa  147  9e-35  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2041  response regulator receiver protein  37.37 
 
 
214 aa  147  9e-35  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212509  hitchhiker  0.00400016 
 
 
-
 
NC_009052  Sbal_0593  response regulator receiver protein  39.69 
 
 
206 aa  147  1.0000000000000001e-34  Shewanella baltica OS155  Bacteria  normal  0.858162  n/a   
 
 
-
 
NC_007493  RSP_0907  two component LuxR family transcriptional regulator  39.18 
 
 
202 aa  147  1.0000000000000001e-34  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.285724  n/a   
 
 
-
 
NC_008700  Sama_3183  response regulator receiver protein  40 
 
 
191 aa  147  1.0000000000000001e-34  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2567  response regulator receiver protein  39.18 
 
 
202 aa  147  1.0000000000000001e-34  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.94208 
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  37.93 
 
 
212 aa  146  2.0000000000000003e-34  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  37.93 
 
 
212 aa  146  2.0000000000000003e-34  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  37.93 
 
 
212 aa  146  2.0000000000000003e-34  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  37.93 
 
 
212 aa  146  2.0000000000000003e-34  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  37.93 
 
 
212 aa  146  2.0000000000000003e-34  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_011662  Tmz1t_3192  two component transcriptional regulator, LuxR family  37.43 
 
 
212 aa  146  2.0000000000000003e-34  Thauera sp. MZ1T  Bacteria  normal  0.513085  n/a   
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  37.93 
 
 
212 aa  146  2.0000000000000003e-34  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  37.93 
 
 
212 aa  146  2.0000000000000003e-34  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  38.61 
 
 
212 aa  145  3e-34  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_008554  Sfum_0582  two component LuxR family transcriptional regulator  37.04 
 
 
206 aa  145  3e-34  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.812865 
 
 
-
 
NC_009507  Swit_5293  two component LuxR family transcriptional regulator  36.13 
 
 
203 aa  145  3e-34  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2096  two component LuxR family transcriptional regulator  38.46 
 
 
212 aa  145  3e-34  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1997  two component transcriptional regulator, LuxR family protein  40.96 
 
 
197 aa  145  3e-34  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.333764  n/a   
 
 
-
 
NC_007510  Bcep18194_A5445  two component LuxR family transcriptional regulator  39.02 
 
 
212 aa  145  4.0000000000000006e-34  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2049  two component LuxR family transcriptional regulator  39.02 
 
 
212 aa  145  4.0000000000000006e-34  Burkholderia ambifaria MC40-6  Bacteria  normal  0.435361  normal 
 
 
-
 
NC_010508  Bcenmc03_2157  two component LuxR family transcriptional regulator  39.02 
 
 
212 aa  145  4.0000000000000006e-34  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2176  two component LuxR family transcriptional regulator  39.02 
 
 
212 aa  145  4.0000000000000006e-34  Burkholderia ambifaria AMMD  Bacteria  normal  0.116055  n/a   
 
 
-
 
NC_008542  Bcen2424_2139  two component LuxR family transcriptional regulator  39.02 
 
 
212 aa  145  4.0000000000000006e-34  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2210  two component LuxR family transcriptional regulator  37.04 
 
 
208 aa  144  6e-34  Rhodoferax ferrireducens T118  Bacteria  normal  0.891166  n/a   
 
 
-
 
NC_009997  Sbal195_3858  two component LuxR family transcriptional regulator  38.66 
 
 
206 aa  144  6e-34  Shewanella baltica OS195  Bacteria  normal  normal  0.0335499 
 
 
-
 
NC_008321  Shewmr4_3517  two component LuxR family transcriptional regulator  38.86 
 
 
201 aa  144  6e-34  Shewanella sp. MR-4  Bacteria  normal  0.751217  normal 
 
 
-
 
NC_007484  Noc_1717  two component LuxR family transcriptional regulator  38.22 
 
 
205 aa  144  1e-33  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_1131  two component LuxR family transcriptional regulator  38.73 
 
 
212 aa  144  1e-33  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0589444  normal  0.612677 
 
 
-
 
NC_008062  Bcen_5938  two component LuxR family transcriptional regulator  38.54 
 
 
212 aa  144  1e-33  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.172889  n/a   
 
 
-
 
NC_009438  Sputcn32_0534  response regulator receiver protein  38.14 
 
 
200 aa  144  1e-33  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3275  response regulator FixJ  37.17 
 
 
205 aa  142  3e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2222  response regulator FixJ  38.74 
 
 
205 aa  142  4e-33  Chelativorans sp. BNC1  Bacteria  normal  0.0446915  n/a   
 
 
-
 
NC_008554  Sfum_0943  two component LuxR family transcriptional regulator  36.65 
 
 
214 aa  141  6e-33  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2117  response regulator FixJ  38.42 
 
 
205 aa  141  8e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0245  response regulator receiver protein  37.63 
 
 
202 aa  140  9.999999999999999e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4652  two component LuxR family transcriptional regulator  37.69 
 
 
208 aa  140  9.999999999999999e-33  Polaromonas sp. JS666  Bacteria  normal  0.398364  normal 
 
 
-
 
NC_010002  Daci_0846  two component LuxR family transcriptional regulator  40 
 
 
209 aa  140  9.999999999999999e-33  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1578  two component LuxR family transcriptional regulator  35.08 
 
 
207 aa  140  1.9999999999999998e-32  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.661779  n/a   
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  37.75 
 
 
214 aa  140  1.9999999999999998e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  37.75 
 
 
214 aa  140  1.9999999999999998e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.274992 
 
 
-
 
NC_007298  Daro_3812  two component LuxR family transcriptional regulator  35.45 
 
 
208 aa  139  3e-32  Dechloromonas aromatica RCB  Bacteria  normal  0.922787  normal  0.026414 
 
 
-
 
NC_010622  Bphy_1472  two component LuxR family transcriptional regulator  37.75 
 
 
214 aa  139  3e-32  Burkholderia phymatum STM815  Bacteria  normal  normal  0.781461 
 
 
-
 
NC_010086  Bmul_5088  two component LuxR family transcriptional regulator  36.17 
 
 
241 aa  138  3.9999999999999997e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.685625 
 
 
-
 
NC_009832  Spro_1065  two component LuxR family transcriptional regulator  37.37 
 
 
206 aa  139  3.9999999999999997e-32  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.00175211 
 
 
-
 
NC_003295  RSc1597  response regulator transcription regulator protein  38.27 
 
 
210 aa  138  4.999999999999999e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  0.395881  normal 
 
 
-
 
NC_010515  Bcenmc03_3910  two component LuxR family transcriptional regulator  35.64 
 
 
210 aa  138  6e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.855973 
 
 
-
 
NC_008543  Bcen2424_3610  two component LuxR family transcriptional regulator  35.64 
 
 
210 aa  138  6e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  0.603365  normal 
 
 
-
 
NC_007511  Bcep18194_B2505  two component LuxR family transcriptional regulator  34.22 
 
 
210 aa  138  7e-32  Burkholderia sp. 383  Bacteria  normal  0.382458  normal  0.897172 
 
 
-
 
NC_008391  Bamb_5346  two component LuxR family transcriptional regulator  35.64 
 
 
210 aa  137  8.999999999999999e-32  Burkholderia ambifaria AMMD  Bacteria  normal  0.0593225  normal  0.752943 
 
 
-
 
NC_010552  BamMC406_3516  two component LuxR family transcriptional regulator  35.64 
 
 
210 aa  137  1e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.584359  normal  0.0331166 
 
 
-
 
NC_009720  Xaut_1744  response regulator receiver protein  36.22 
 
 
213 aa  137  1e-31  Xanthobacter autotrophicus Py2  Bacteria  normal  0.933486  normal  0.721753 
 
 
-
 
NC_010681  Bphyt_2166  two component transcriptional regulator, LuxR family  34.34 
 
 
220 aa  137  1e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_5156  two component transcriptional regulator, LuxR family  37.63 
 
 
208 aa  136  2e-31  Variovorax paradoxus S110  Bacteria  normal  0.497351  n/a   
 
 
-
 
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