Gene Noc_1717 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_1717 
Symbol 
ID3704639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand- 
Start bp1921034 
End bp1921651 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content49% 
IMG OID637738198 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_343719 
Protein GI77165194 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGACAC GGGAACCGAT GGTGTTTATC GTCGATGATG GCGTTACGGT TAGAAACTCA 
TTGGGTCCCT CGCTTCAGTC CGTAGGCTAT CGCGTAAAGG TCTGCGAATC TGCTGAAGCT 
TTCCTTAAAG TTTATGAGCC CAATCAACCG GGTTGTATTA TTTTAGATGT TCAGATGCCC 
GAGAGCACAG GATTGGATCT GCAAGAATAT TTGGTCTCCG AGCAGATCCC TATTCCTGTG 
ATATTCATTA CGGGACAAGC GGATGTGCCC ACCGTAGTGC GGGCCGTGAA GCAGGGCGCG 
GTGGATTTTT TGTTGAAACC TTTTGATTTT GAGACCCTGC TGCGATCCAT TCAGGAAGCA 
ATTGAGCTAG ACCAAATTAA ACGGACCGAG CGCGCTCAAC GGGATACTAT CGAAAAACGA 
TTAGCTTCCC TGACACCGCG GGAAAGGGAT GTTTTGGATA AGGTTATCGA AGGAAAGCTC 
AATAAGGTGA TTGCTGCTGA ATTAGAAGTG AGCATCCGTA CGGTAGAAAT CCACCGTGCC 
CGCCTTATGG CTAAGATGAA AGTCAGGCGT CCTACTGAAT TGGCCCGCCT CGTACTCAAG 
CTTCGGCGTT CCTCGTAG
 
Protein sequence
MATREPMVFI VDDGVTVRNS LGPSLQSVGY RVKVCESAEA FLKVYEPNQP GCIILDVQMP 
ESTGLDLQEY LVSEQIPIPV IFITGQADVP TVVRAVKQGA VDFLLKPFDF ETLLRSIQEA 
IELDQIKRTE RAQRDTIEKR LASLTPRERD VLDKVIEGKL NKVIAAELEV SIRTVEIHRA 
RLMAKMKVRR PTELARLVLK LRRSS