Gene Vapar_5156 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5156 
Symbol 
ID7971527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5471861 
End bp5472487 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content71% 
IMG OID644795750 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_002947024 
Protein GI239818114 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.497351 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACCGC TGATCGACGG CCTGATCTTC ATCGTGGACG ACGACGCCAG CGTGCGCGAG 
GCGCTGGCCT GGCTGCTGCG CTCGCGCCGC CTCGAAAGCG AGCACTTCGC GAGCGCCGAG 
GCCTTCGAGC TGCGCCTGGC CGAAGGCCCG CTGCCCGACC AGCCGCTGTG CCTGCTGCTG 
GACGTGCGCA TGCCCGGCAC CAGCGGCCTG GTGCTGTTCG ACCGGCTCGC CGAGCGCGGC 
CTGCTGGACG CCATGCCGGT GATCTTCCTG ACCGGCCATG CCGACGTGCC CACGGCCGTG 
GATGCGGTGA AGCGCGGCGC CTTCGACTTC TGCGAGAAGC CGTTCTCCGA CAACGCCCTG 
GTCGACCGCA TCGAGCAGGC GCTGGGCGCT TCGCTGCGGG CGCTGGAGGT GCGGCGCGTG 
CGGCGCAGCC TGGCCGGCCG CGTCGCCGAA CTGACCGAGC GCGAGCGCGA CGTGATGCGG 
CTCGTGGTCG AGGGCCTGCC GAACAAGCTG ATCGCCGATC AGCTGGCCAT CAGCGTGCGC 
ACGGTGGAGG TCCACCGCGC ACGCGTGTTC GACAAGATGG AAGTGAAATC GGCGGTCGAG 
CTGGCCAACC GCCTGCGGGA TCTCTAG
 
Protein sequence
MQPLIDGLIF IVDDDASVRE ALAWLLRSRR LESEHFASAE AFELRLAEGP LPDQPLCLLL 
DVRMPGTSGL VLFDRLAERG LLDAMPVIFL TGHADVPTAV DAVKRGAFDF CEKPFSDNAL 
VDRIEQALGA SLRALEVRRV RRSLAGRVAE LTERERDVMR LVVEGLPNKL IADQLAISVR 
TVEVHRARVF DKMEVKSAVE LANRLRDL