| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4067 |
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| Symbol | |
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| ID | 5612898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4980256 |
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| End bp | 4980885 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935022 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001475799 |
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| Protein GI | 157377199 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4566] Response regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAACA CACTGCCGCT TTATCTCGTC GATGATGATA TCGCAATTTT AGACTCACTC
AGCTTTATGC TCGGCCAGTT CGGCTATAAC ATCACGGCGT TTAATAATGG TGATGACTTT
CTCAATACAG TCCCCTTAGA GCGGCCTGCT TGCGTCATAC TCGATAGCCG AATGCCGGAG
GTCAGCGGGC AGGAGGTCCA GCAAAAACTA CTCGAAATAG ACAGCCCACT GGGCATTATT
TTTCTCACCG GGCATGGGGA TATGCCCATG GCGGTCGATG CCTTTCGAAA GGGAGCCTGT
GACTTTTTCC AAAAACCCGT TTCGGGAAAA GCCTTGAGTT GTGCAATCGA CAAGGCGATG
CTATACAGTC ATAGAACCTT CGAGGCTCAG TCTCTCAAAC GGAAATTGTC TACCCTATCG
GAACGAGAGC AAGAGGTACT GAATCTGCTC ACTAAAGGGA TGACCAATAA GCAGATATCG
GAGGCGCTAT TCCTCTCTTT GAGGACCATA GAGGTTCACC GAGCTAAAGT GATGAAAAAG
CTTGAGGTAC ACAACATGGC CGAACTGGCC AAATATTCAC AGATGAGTTC CGCTGAAGAT
CTGGATGAGA TCTTAGGCTC ACTGAGCTAA
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| Protein sequence | MPNTLPLYLV DDDIAILDSL SFMLGQFGYN ITAFNNGDDF LNTVPLERPA CVILDSRMPE
VSGQEVQQKL LEIDSPLGII FLTGHGDMPM AVDAFRKGAC DFFQKPVSGK ALSCAIDKAM
LYSHRTFEAQ SLKRKLSTLS EREQEVLNLL TKGMTNKQIS EALFLSLRTI EVHRAKVMKK
LEVHNMAELA KYSQMSSAED LDEILGSLS
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