Gene Tmz1t_3400 details

Gene Information

• Locus tag: Tmz1t_3400
• ID: 7873891
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thauera sp. MZ1T
• Kingdom: Bacteria
• Replicon accession: NC_011662
• Strand: +
• Start bp: 3719988
• End bp: 3720593
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 643700339
• Product: two component transcriptional regulator, LuxR family
• Protein accession: YP_002890371
• Protein GI: 237654057
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4566] Response regulator
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCCCG CCTGCACGCA CATCATCGAC GACGACGAAG CCATCCGCGA CGCCCTCGAA 
TGGCTGTTCA AGACGCGCGG CGTACCCTGC CGGAGCTGGG CCTCGGCCGA GGCCTTCCTC 
GCCGACTGGC GCGGCGACTG GCGCGGCTGC ATCGTGCTCG ACATCCGCAT GCAGGGCATG 
AGCGGGCTGG AGTGCTTCGA CGAGCTGCTC GCGCGCGGCT GCCAGCTGCC GGTGATCTTC 
ATCACCGGCC ACGGCGACGT GCCGATGGCG GTGGCGGCGC TCAAAAAGGG CGCCTTCCAC 
TTCATCGAGA AGCCCTTCAA CGACCACGAT CTCGTCGACC TTGTCGAGAA GGCGCTCGCC 
ACCGACGACG AGCGCCTGCG CGCCGCCGCC AGCCGCGAGA CCATCGAGGC ACGCCTGGCC 
ACGCTCACCC AGCGCGAGCG CGAGGTCATG GAGCTGATCC TCGAAGGCAA GTACAACAAG 
GTGATCGCCG ACGACCTGTC GATCTCGATG CGCACCGTGG AGGCGCACCG CTCGCGCATC 
TTCGAGAAGA TGGAGGTGCG CTCGGCGGTC GAGCTGGCAC AGCTGCTGAC CACGCTGCGC 
ACCTGA 

 

Protein sequence

MNPACTHIID DDEAIRDALE WLFKTRGVPC RSWASAEAFL ADWRGDWRGC IVLDIRMQGM 
SGLECFDELL ARGCQLPVIF ITGHGDVPMA VAALKKGAFH FIEKPFNDHD LVDLVEKALA 
TDDERLRAAA SRETIEARLA TLTQREREVM ELILEGKYNK VIADDLSISM RTVEAHRSRI 
FEKMEVRSAV ELAQLLTTLR T