More than 300 homologs were found in PanDaTox collection
for query gene Mext_4345 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010172  Mext_4345  regulatory protein LuxR  100 
 
 		 216 aa  420  1e-117  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_4714  two component transcriptional regulator, LuxR family  99.54 
 
 		 216 aa  417  1e-116  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.375128 
 
 
-
 
NC_010725  Mpop_4862  two component transcriptional regulator, LuxR family  86.05 
 
 		 215 aa  362  2e-99  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.146847 
 
 
-
 
NC_010172  Mext_3579  regulatory protein LuxR  69.48 
 
 		 213 aa  253  1.0000000000000001e-66  Methylobacterium extorquens PA1  Bacteria  normal  0.0227422  normal  1 
 
 
-
 
NC_010511  M446_4981  two component LuxR family transcriptional regulator  33.03 
 
 		 244 aa  109  3e-23  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_3347  two component LuxR family transcriptional regulator  31.25 
 
 		 234 aa  94  1e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.563314  normal  1 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  33.5 
 
 		 216 aa  90.9  1e-17  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  33.5 
 
 		 216 aa  90.9  1e-17  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  32.69 
 
 		 216 aa  89.7  3e-17  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  31.4 
 
 		 212 aa  89.4  4e-17  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.383896 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  33.01 
 
 		 216 aa  88.6  6e-17  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_010571  Oter_3231  two component LuxR family transcriptional regulator  31.07 
 
 		 209 aa  86.3  3e-16  Opitutus terrae PB90-1  Bacteria  normal  0.229823  normal  0.0283688 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  33.18 
 
 		 215 aa  86.7  3e-16  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  30.33 
 
 		 209 aa  85.9  4e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0596  two component LuxR family transcriptional regulator  35.61 
 
 		 228 aa  85.9  4e-16  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  31.71 
 
 		 212 aa  85.1  6e-16  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  32.23 
 
 		 215 aa  85.1  6e-16  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_0097  two component transcriptional regulator, LuxR family  32.2 
 
 		 209 aa  84.7  9e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  0.142871  n/a   
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  32.38 
 
 		 215 aa  84.7  0.000000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  33.5 
 
 		 221 aa  84.7  0.000000000000001  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  29.61 
 
 		 238 aa  84.3  0.000000000000001  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  29.52 
 
 		 216 aa  84  0.000000000000002  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  28.02 
 
 		 213 aa  83.6  0.000000000000002  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  32.38 
 
 		 215 aa  83.6  0.000000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  28.85 
 
 		 216 aa  82.8  0.000000000000003  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  33.01 
 
 		 217 aa  82.8  0.000000000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  33.01 
 
 		 217 aa  82.8  0.000000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  30.56 
 
 		 215 aa  82.8  0.000000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  36.19 
 
 		 206 aa  82.8  0.000000000000004  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  33.97 
 
 		 230 aa  82.4  0.000000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00554548 
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  35.55 
 
 		 225 aa  82.8  0.000000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  30 
 
 		 235 aa  82.4  0.000000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  32.56 
 
 		 213 aa  82.4  0.000000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  30.4 
 
 		 227 aa  82  0.000000000000006  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  32.38 
 
 		 216 aa  81.6  0.000000000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  31.48 
 
 		 222 aa  81.6  0.000000000000008  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  26.7 
 
 		 208 aa  81.6  0.000000000000008  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_2789  two component transcriptional regulator, LuxR family  32.08 
 
 		 212 aa  81.6  0.000000000000009  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.246733  n/a   
 
 
-
 
NC_010505  Mrad2831_4801  two component LuxR family transcriptional regulator  32.23 
 
 		 223 aa  81.3  0.00000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.136897 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  30.29 
 
 		 221 aa  80.9  0.00000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  32.08 
 
 		 218 aa  80.9  0.00000000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  41.09 
 
 		 216 aa  80.9  0.00000000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  34.13 
 
 		 213 aa  81.3  0.00000000000001  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  32.21 
 
 		 208 aa  81.3  0.00000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  26.96 
 
 		 209 aa  80.9  0.00000000000001  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  36.57 
 
 		 233 aa  80.1  0.00000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  28.64 
 
 		 220 aa  80.1  0.00000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  28.37 
 
 		 222 aa  79.3  0.00000000000004  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_3589  two component LuxR family transcriptional regulator  31.79 
 
 		 210 aa  79  0.00000000000005  Serratia proteamaculans 568  Bacteria  normal  0.993543  normal  0.0443312 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  33.19 
 
 		 242 aa  79  0.00000000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  31.13 
 
 		 224 aa  79  0.00000000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_009921  Franean1_6351  two component LuxR family transcriptional regulator  33.02 
 
 		 244 aa  79  0.00000000000006  Frankia sp. EAN1pec  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  31.43 
 
 		 214 aa  78.6  0.00000000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_008697  Noca_4896  response regulator receiver  32.23 
 
 		 215 aa  78.6  0.00000000000007  Nocardioides sp. JS614  Bacteria  normal  0.446448  normal  0.220667 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  30.43 
 
 		 223 aa  78.6  0.00000000000007  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  28.37 
 
 		 220 aa  78.2  0.00000000000008  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_011988  Avi_5384  two component response regulator  30.34 
 
 		 216 aa  78.2  0.00000000000008  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  37.58 
 
 		 243 aa  78.2  0.00000000000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  33.78 
 
 		 224 aa  78.2  0.00000000000009  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  29.52 
 
 		 226 aa  78.2  0.00000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_013522  Taci_0801  two component transcriptional regulator, LuxR family  29.72 
 
 		 227 aa  77.4  0.0000000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  30.14 
 
 		 223 aa  78.2  0.0000000000001  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal  1 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  28.37 
 
 		 220 aa  78.2  0.0000000000001  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  32.72 
 
 		 217 aa  77.4  0.0000000000001  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  31.55 
 
 		 206 aa  77.8  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal  1 
 
 
-
 
NC_011894  Mnod_3782  two component transcriptional regulator, LuxR family  29.27 
 
 		 223 aa  77  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_012850  Rleg_1495  two component transcriptional regulator, LuxR family  31.71 
 
 		 207 aa  77  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.194449  normal  0.395611 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  33.63 
 
 		 225 aa  76.6  0.0000000000002  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  28.37 
 
 		 220 aa  77  0.0000000000002  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  29.33 
 
 		 219 aa  77.4  0.0000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  33.64 
 
 		 222 aa  76.6  0.0000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal  1 
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  27.59 
 
 		 229 aa  76.6  0.0000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014212  Mesil_0065  two component transcriptional regulator, LuxR family  31.25 
 
 		 204 aa  76.3  0.0000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  30.95 
 
 		 213 aa  76.3  0.0000000000003  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  31.6 
 
 		 215 aa  76.3  0.0000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  28.02 
 
 		 239 aa  76.6  0.0000000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  29.41 
 
 		 224 aa  76.3  0.0000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  28.02 
 
 		 220 aa  76.3  0.0000000000003  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  29.33 
 
 		 217 aa  76.6  0.0000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  27.94 
 
 		 210 aa  76.3  0.0000000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  28.02 
 
 		 220 aa  76.3  0.0000000000004  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  32.26 
 
 		 217 aa  75.9  0.0000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  28.37 
 
 		 216 aa  76.3  0.0000000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  28.02 
 
 		 220 aa  76.3  0.0000000000004  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_4258  two component LuxR family transcriptional regulator  31.07 
 
 		 216 aa  75.9  0.0000000000005  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  27.05 
 
 		 209 aa  75.9  0.0000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal  1 
 
 
-
 
NC_008148  Rxyl_2511  two component LuxR family transcriptional regulator  32.13 
 
 		 229 aa  75.9  0.0000000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  27.94 
 
 		 211 aa  75.5  0.0000000000005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  30.29 
 
 		 219 aa  75.9  0.0000000000005  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  29.38 
 
 		 235 aa  75.5  0.0000000000005  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal  1 
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  30.73 
 
 		 217 aa  75.5  0.0000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.482316 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  28.02 
 
 		 220 aa  75.5  0.0000000000006  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_013521  Sked_17000  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.43 
 
 		 233 aa  75.1  0.0000000000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  0.523967 
 
 
-
 
NC_009674  Bcer98_3871  two component LuxR family transcriptional regulator  27.88 
 
 		 200 aa  75.1  0.0000000000007  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00685623  n/a   
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  29.68 
 
 		 234 aa  75.1  0.0000000000008  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  34.1 
 
 		 225 aa  75.1  0.0000000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.137578 
 
 
-
 
NC_010511  M446_2139  two component LuxR family transcriptional regulator  30.56 
 
 		 244 aa  75.1  0.0000000000008  Methylobacterium sp. 4-46  Bacteria  normal  0.0202732  normal  0.168937 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  33.64 
 
 		 234 aa  75.1  0.0000000000008  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.336237 
 
 
-
 
NC_011772  BCG9842_B5477  DNA-binding response regulator  27.88 
 
 		 200 aa  75.1  0.0000000000008  Bacillus cereus G9842  Bacteria  hitchhiker  0.00156963  hitchhiker  0.00000000000102018 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  30.24 
 
 		 221 aa  75.1  0.0000000000008  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
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