127 homologs were found in PanDaTox collection
for query gene Sbal223_1612 on replicon NC_011663
Organism: Shewanella baltica OS223



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009052  Sbal_2747  FAD dependent oxidoreductase  96.35 
 
 
713 aa  1413  Shewanella baltica OS155  Bacteria  hitchhiker  0.00546324  n/a   
 
 
-
 
NC_011663  Sbal223_1612  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  100 
 
 
708 aa  1463  Shewanella baltica OS223  Bacteria  decreased coverage  8.12918e-06  normal 
 
 
-
 
NC_004347  SO_3073  hypothetical protein  64.43 
 
 
643 aa  836  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_1486  FAD dependent oxidoreductase  64.45 
 
 
646 aa  838  Shewanella sp. MR-7  Bacteria  normal  0.193166  normal 
 
 
-
 
NC_009438  Sputcn32_2446  FAD dependent oxidoreductase  82.77 
 
 
680 aa  1198  Shewanella putrefaciens CN-32  Bacteria  unclonable  2.88925e-07  n/a   
 
 
-
 
NC_008577  Shewana3_1474  FAD dependent oxidoreductase  65.28 
 
 
640 aa  855  Shewanella sp. ANA-3  Bacteria  normal  0.123359  normal  0.492 
 
 
-
 
NC_009665  Shew185_2764  FAD dependent oxidoreductase  91.67 
 
 
685 aa  1322  Shewanella baltica OS185  Bacteria  hitchhiker  0.00507569  n/a   
 
 
-
 
NC_009997  Sbal195_2841  FAD dependent oxidoreductase  97.32 
 
 
708 aa  1424  Shewanella baltica OS195  Bacteria  unclonable  1.53917e-05  decreased coverage  0.000123138 
 
 
-
 
NC_008321  Shewmr4_1421  FAD dependent oxidoreductase  64.94 
 
 
642 aa  844  Shewanella sp. MR-4  Bacteria  normal  0.0305521  normal 
 
 
-
 
NC_008345  Sfri_1390  FAD dependent oxidoreductase  48.91 
 
 
697 aa  615  1e-175  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1481  FAD dependent oxidoreductase  47.56 
 
 
754 aa  592  1e-168  Shewanella denitrificans OS217  Bacteria  decreased coverage  4.25578e-06  n/a   
 
 
-
 
NC_010506  Swoo_3009  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  46.86 
 
 
696 aa  570  1e-161  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1643  FAD dependent oxidoreductase  45.8 
 
 
712 aa  568  1e-160  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.0028636  normal 
 
 
-
 
NC_009901  Spea_1605  FAD dependent oxidoreductase  50.43 
 
 
641 aa  539  1e-152  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00154209  n/a   
 
 
-
 
NC_009092  Shew_2411  FAD dependent oxidoreductase  48.46 
 
 
686 aa  498  1e-139  Shewanella loihica PV-4  Bacteria  normal  0.82841  normal 
 
 
-
 
NC_008700  Sama_2155  glycine/D-amino acid oxidase (deaminating)-like protein  51.09 
 
 
604 aa  416  1e-115  Shewanella amazonensis SB2B  Bacteria  normal  0.195632  normal 
 
 
-
 
NC_012917  PC1_2806  5-methylaminomethyl-2-thiouridine methyltransferase  36.76 
 
 
675 aa  378  1e-103  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.641074  n/a   
 
 
-
 
NC_013421  Pecwa_1458  5-methylaminomethyl-2-thiouridine methyltransferase  37.01 
 
 
675 aa  378  1e-103  Pectobacterium wasabiae WPP163  Bacteria  normal  0.622829  n/a   
 
 
-
 
NC_012880  Dd703_2586  5-methylaminomethyl-2-thiouridine methyltransferase  36.27 
 
 
675 aa  364  3e-99  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1410  5-methylaminomethyl-2-thiouridine methyltransferase  35 
 
 
689 aa  353  6e-96  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  2.03784e-07  n/a   
 
 
-
 
NC_010465  YPK_1519  5-methylaminomethyl-2-thiouridine methyltransferase  35 
 
 
689 aa  353  7e-96  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0252518  n/a   
 
 
-
 
NC_010159  YpAngola_A0372  5-methylaminomethyl-2-thiouridine methyltransferase  35 
 
 
689 aa  353  7e-96  Yersinia pestis Angola  Bacteria  hitchhiker  0.000353518  normal 
 
 
-
 
NC_009832  Spro_3369  5-methylaminomethyl-2-thiouridine methyltransferase  35.97 
 
 
673 aa  345  2e-93  Serratia proteamaculans 568  Bacteria  decreased coverage  0.00235092  normal 
 
 
-
 
NC_009457  VC0395_A1694  5-methylaminomethyl-2-thiouridine methyltransferase  34.18 
 
 
674 aa  343  6e-93  Vibrio cholerae O395  Bacteria  hitchhiker  0.00252388  n/a   
 
 
-
 
NC_009436  Ent638_2872  5-methylaminomethyl-2-thiouridine methyltransferase  34.97 
 
 
666 aa  338  2e-91  Enterobacter sp. 638  Bacteria  normal  0.715577  normal  0.0703666 
 
 
-
 
NC_012912  Dd1591_1358  5-methylaminomethyl-2-thiouridine methyltransferase  35.9 
 
 
672 aa  338  3e-91  Dickeya zeae Ech1591  Bacteria  normal  0.0608182  n/a   
 
 
-
 
NC_011149  SeAg_B2519  5-methylaminomethyl-2-thiouridine methyltransferase  34.93 
 
 
666 aa  336  9e-91  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2732  5-methylaminomethyl-2-thiouridine methyltransferase  34.78 
 
 
666 aa  335  2e-90  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2621  5-methylaminomethyl-2-thiouridine methyltransferase  34.78 
 
 
666 aa  335  2e-90  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  3.50397e-06 
 
 
-
 
NC_011080  SNSL254_A2568  5-methylaminomethyl-2-thiouridine methyltransferase  34.78 
 
 
666 aa  334  4e-90  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.580805  normal 
 
 
-
 
NC_011094  SeSA_A2608  5-methylaminomethyl-2-thiouridine methyltransferase  34.64 
 
 
666 aa  333  5e-90  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2475  5-methylaminomethyl-2-thiouridine methyltransferase  33.98 
 
 
668 aa  333  7e-90  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1328  5-methylaminomethyl-2-thiouridine methyltransferase  33.98 
 
 
668 aa  333  7e-90  Escherichia coli ATCC 8739  Bacteria  normal  0.831924  normal 
 
 
-
 
NC_010658  SbBS512_E2702  5-methylaminomethyl-2-thiouridine methyltransferase  33.83 
 
 
668 aa  333  8e-90  Shigella boydii CDC 3083-94  Bacteria  normal  0.673186  n/a   
 
 
-
 
CP001637  EcDH1_1332  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  33.98 
 
 
668 aa  332  1e-89  Escherichia coli DH1  Bacteria  normal  0.602375  n/a   
 
 
-
 
NC_010498  EcSMS35_2481  5-methylaminomethyl-2-thiouridine methyltransferase  34.13 
 
 
668 aa  331  3e-89  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3465  5-methylaminomethyl-2-thiouridine methyltransferase  34.08 
 
 
668 aa  331  3e-89  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2619  5-methylaminomethyl-2-thiouridine methyltransferase  33.83 
 
 
668 aa  331  3e-89  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02249  hypothetical protein  33.98 
 
 
668 aa  331  4e-89  Escherichia coli BL21(DE3)  Bacteria  normal  0.425785  n/a   
 
 
-
 
NC_012892  B21_02209  hypothetical protein  33.98 
 
 
668 aa  331  4e-89  Escherichia coli BL21  Bacteria  normal  0.334228  n/a   
 
 
-
 
NC_013456  VEA_002869  5-methylaminomethyl-2-thiouridine-forming enzyme MnmC  33.19 
 
 
672 aa  330  4e-89  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00103068  n/a   
 
 
-
 
NC_009783  VIBHAR_03106  5-methylaminomethyl-2-thiouridine methyltransferase  32.45 
 
 
672 aa  325  2e-87  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I1070  5-methylaminomethyl-2-thiouridine methyltransferase  30.64 
 
 
680 aa  324  4e-87  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.388206  n/a   
 
 
-
 
NC_008709  Ping_1996  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  31.99 
 
 
690 aa  307  4e-82  Psychromonas ingrahamii 37  Bacteria  normal  0.155036  normal  0.387333 
 
 
-
 
NC_008309  HS_0664  5-methylaminomethyl-2-thiouridine methyltransferase  32.45 
 
 
676 aa  297  4e-79  Haemophilus somnus 129PT  Bacteria  normal  0.0436264  n/a   
 
 
-
 
NC_003910  CPS_3808  hypothetical protein  27.57 
 
 
682 aa  248  3e-64  Colwellia psychrerythraea 34H  Bacteria  normal  0.424966  n/a   
 
 
-
 
NC_008228  Patl_3384  hypothetical protein  27.57 
 
 
705 aa  219  9e-56  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0704  hypothetical protein  27.46 
 
 
699 aa  208  3e-52  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4098  5-methylaminomethyl-2-thiouridine methyltransferase  28.25 
 
 
659 aa  204  3e-51  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3742  5-methylaminomethyl-2-thiouridine methyltransferase  27.53 
 
 
665 aa  202  1e-50  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.0063824 
 
 
-
 
NC_009439  Pmen_3230  5-methylaminomethyl-2-thiouridine methyltransferase  28.78 
 
 
657 aa  197  5e-49  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1390  hypothetical protein  28.07 
 
 
622 aa  197  5e-49  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.909333 
 
 
-
 
NC_004578  PSPTO_1639  oxidoreductase, FAD-binding protein  27.74 
 
 
660 aa  197  6e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.562541  n/a   
 
 
-
 
NC_011901  Tgr7_1861  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  27.72 
 
 
661 aa  196  1e-48  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1343  5-methylaminomethyl-2-thiouridine methyltransferase  26.61 
 
 
654 aa  192  2e-47  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_34940  5-methylaminomethyl-2-thiouridine methyltransferase  28.42 
 
 
653 aa  191  3e-47  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19400  5-methylaminomethyl-2-thiouridine methyltransferase  27.89 
 
 
654 aa  184  6e-45  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0825831  normal 
 
 
-
 
NC_009656  PSPA7_1671  5-methylaminomethyl-2-thiouridine methyltransferase  28.04 
 
 
654 aa  183  8e-45  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_009512  Pput_3963  5-methylaminomethyl-2-thiouridine methyltransferase  31.73 
 
 
654 aa  182  2e-44  Pseudomonas putida F1  Bacteria  normal  0.94523  normal  0.0279642 
 
 
-
 
NC_002947  PP_1751  5-methylaminomethyl-2-thiouridine methyltransferase  31.22 
 
 
654 aa  179  1e-43  Pseudomonas putida KT2440  Bacteria  normal  0.266449  normal 
 
 
-
 
NC_010501  PputW619_1359  5-methylaminomethyl-2-thiouridine methyltransferase  26.36 
 
 
657 aa  177  8e-43  Pseudomonas putida W619  Bacteria  normal  0.490609  normal  0.307096 
 
 
-
 
NC_010681  Bphyt_3932  5-methylaminomethyl-2-thiouridine methyltransferase  26.34 
 
 
656 aa  174  6e-42  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4505  5-methylaminomethyl-2-thiouridine methyltransferase  25.44 
 
 
656 aa  162  2e-38  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_3066  5-methylaminomethyl-2-thiouridine methyltransferase  25.07 
 
 
655 aa  161  5e-38  Burkholderia phymatum STM815  Bacteria  normal  normal  0.16811 
 
 
-
 
NC_006368  lpp1489  hypothetical protein  24.07 
 
 
666 aa  160  1e-37  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_2850  5-methylaminomethyl-2-thiouridine methyltransferase  25.19 
 
 
644 aa  159  2e-37  Dechloromonas aromatica RCB  Bacteria  normal  0.413253  normal  0.437245 
 
 
-
 
NC_006369  lpl1494  hypothetical protein  24.27 
 
 
666 aa  158  4e-37  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010551  BamMC406_0066  5-methylaminomethyl-2-thiouridine methyltransferase  25.41 
 
 
652 aa  157  6e-37  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0067  5-methylaminomethyl-2-thiouridine methyltransferase  25.44 
 
 
657 aa  155  2e-36  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009707  JJD26997_0457  5-methylaminomethyl-2-thiouridine methyltransferase  24.64 
 
 
613 aa  155  2e-36  Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  8.95922e-10  n/a   
 
 
-
 
NC_009654  Mmwyl1_3401  hypothetical protein  23.99 
 
 
674 aa  156  2e-36  Marinomonas sp. MWYL1  Bacteria  normal  0.473665  normal 
 
 
-
 
NC_008390  Bamb_0056  5-methylaminomethyl-2-thiouridine methyltransferase  25.3 
 
 
652 aa  154  5e-36  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2377  hypothetical protein  26.78 
 
 
667 aa  153  1e-35  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.954774 
 
 
-
 
NC_010682  Rpic_1871  5-methylaminomethyl-2-thiouridine methyltransferase  25.48 
 
 
672 aa  149  2e-34  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0302238 
 
 
-
 
NC_003912  CJE1404  5-methylaminomethyl-2-thiouridine methyltransferase  23.78 
 
 
613 aa  148  4e-34  Campylobacter jejuni RM1221  Bacteria  normal  0.628111  n/a   
 
 
-
 
NC_009074  BURPS668_0003  5-methylaminomethyl-2-thiouridine methyltransferase  25.84 
 
 
708 aa  148  4e-34  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0743  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  25 
 
 
668 aa  148  4e-34  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3396  5-methylaminomethyl-2-thiouridine methyltransferase  25.84 
 
 
708 aa  147  6e-34  Burkholderia mallei SAVP1  Bacteria  normal  0.145892  n/a   
 
 
-
 
NC_003295  RSc1709  5-methylaminomethyl-2-thiouridine methyltransferase  26.25 
 
 
657 aa  147  9e-34  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0318232 
 
 
-
 
NC_010508  Bcenmc03_0085  5-methylaminomethyl-2-thiouridine methyltransferase  26.18 
 
 
643 aa  145  3e-33  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008787  CJJ81176_1284  5-methylaminomethyl-2-thiouridine methyltransferase  23.67 
 
 
613 aa  144  4e-33  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  hitchhiker  0.000566158  n/a   
 
 
-
 
NC_006348  BMA2914  5-methylaminomethyl-2-thiouridine methyltransferase  25.7 
 
 
660 aa  144  5e-33  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1628  5-methylaminomethyl-2-thiouridine methyltransferase  25.7 
 
 
711 aa  144  7e-33  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0003  5-methylaminomethyl-2-thiouridine methyltransferase  25.7 
 
 
711 aa  144  7e-33  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0217  5-methylaminomethyl-2-thiouridine methyltransferase  25.7 
 
 
660 aa  144  7e-33  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2973  5-methylaminomethyl-2-thiouridine methyltransferase  25.7 
 
 
711 aa  144  7e-33  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_0004  5-methylaminomethyl-2-thiouridine methyltransferase  26.18 
 
 
643 aa  144  8e-33  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0066  5-methylaminomethyl-2-thiouridine methyltransferase  26.18 
 
 
643 aa  144  8e-33  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3248  5-methylaminomethyl-2-thiouridine methyltransferase  25.11 
 
 
648 aa  143  1e-32  Burkholderia sp. 383  Bacteria  normal  normal  0.826772 
 
 
-
 
NC_012856  Rpic12D_1538  5-methylaminomethyl-2-thiouridine methyltransferase  26.18 
 
 
672 aa  142  2e-32  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0998844 
 
 
-
 
NC_007520  Tcr_0130  hypothetical protein  26.33 
 
 
674 aa  141  5e-32  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.000346728  n/a   
 
 
-
 
NC_008740  Maqu_1170  hypothetical protein  26.55 
 
 
631 aa  139  2e-31  Marinobacter aquaeolei VT8  Bacteria  normal  0.285143  n/a   
 
 
-
 
NC_007973  Rmet_1887  5-methylaminomethyl-2-thiouridine methyltransferase  26.02 
 
 
672 aa  139  2e-31  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0003  5-methylaminomethyl-2-thiouridine methyltransferase  26.42 
 
 
657 aa  137  7e-31  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1956  5-methylaminomethyl-2-thiouridine methyltransferase  25.52 
 
 
644 aa  137  8e-31  Thauera sp. MZ1T  Bacteria  normal  0.243551  n/a   
 
 
-
 
NC_007912  Sde_1471  hypothetical protein  27.72 
 
 
707 aa  134  7e-30  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1977  hypothetical protein  24.41 
 
 
697 aa  123  1e-26  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1378  5-methylaminomethyl-2-thiouridine methyltransferase  24.67 
 
 
668 aa  117  8e-25  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1927  hypothetical protein  23.78 
 
 
617 aa  115  2e-24  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.224364  n/a   
 
 
-
 
NC_011138  MADE_01191  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  33.18 
 
 
741 aa  115  2e-24  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
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