| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1612 |
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| Symbol | |
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| ID | 7090013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 1886679 |
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| End bp | 1888805 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 643460513 |
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| Product | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC |
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| Protein accession | YP_002357540 |
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| Protein GI | 217972789 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000812918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACTGCAG AGCCCAATAA ACCTTGCCAA ATTAAGCGTG ATTACCAGCA ATTAATCAAC
CTTTATCCCG CAACAGCTGA CACTGATGCA CACTATCTCA GCAAGTTGAG CATTTATCAG
CAGCGGGTAT TTGAGGCTCA TTCACAGCAA AAACTCTTAG TATTAGGCCA AATTGGTTTA
GGTAACGGGC TTGAACTCTT ATCTTGGTGG CGCACTCAGG CGAATCCTAG CCAACGTTTA
CTCCTTAAGG TGTTCGAACC CAATCCGATT AATGCATACG AACTTAAATC ACTTTGGGAT
CAATCACTCA CTCTTGTGAA AGAAACCCCA TTCGAGCCAC ATCTTGAATC AAAGCAAGCG
TCAGCGTTGG AGTGTAAATC TAAGCTCAGC CAGCTTGCTC AAACCTTACT CGATGCTGAG
CCGACGGCTA TTATAGGTTG CCAGAGATTA ATTTTTGATG ACGGTCGTAC CACTATCGAC
CTGCACTTTG GTGATATTCA AACCCAGCTC AGTTCACTCA GCCATTCGCC AATGCATCCG
GTTCAACACT GGTTGATATT GCCTCACCTG CTACAGGCGC TACATCATCA AAGCCACTGG
CAGATGGCAA AACTCAGTGA CGATAGCGCG ACCATTGCCA CGATTGGATT AAGCGAATCA
AGCGGATTAA GCGAAACAAC AGTCAACCGT TTCCAAGCCT GTGGCTTTAC TGTGAGCGAT
ATCAATAAAC TTGCTACCAA AGCTCTGGGT ATCCATCAGC CAGTCACACT GATTAACCAC
CAGCTTGATA CCGTACTGCT ACACGAGCGC CAAGTCCTAC GTCAGCAAGA CGCTAAAGCC
TATGCTTTTA ATCCTATGGC TGCAATCTTA TCCTCGGCGA CGCAAAGCTC AATTGCCATC
ATAGGCGGCG GCTTAGCCTC AGCGCATTTG GCGCTGTCTT TGGCTGAGCG CGGCCAAGGT
GCACAGGTAT TTTGTAAAGA TGCCGAGCTA GGCCAAGGCG CATCGGGCAA TCGCCAAGGA
GCCATTTATC CGCTGCTGAC CCCAGAAAAT GACGAGCTGA GCCGCTTTTT CCAACAAGCA
TTTTTATTTA GCCGACGTCG AGTGCAGGCG CTGACATCCG CCCCCGCCAA CAATCAGACG
CCGATTTCCC ATAATTTTTG CGGCGTATTG CAAACTGCCC ACGATGAACG CAGCCAGTTA
CGACTCGATA AAATCATTCA AGGCCAACCC TGGCCAAGTG AAATCGCCTA CGCCGTTGAT
GCTGAGCAAG CCAATGCCAT TGCCAAGATC AATCTCGATA AACCAGGTTT TTTTTATCCC
TTAGGTGGCT GGGTTTGCCC ATTTGAATAT GCCGACGCTG CGATACAAAA AGCGATGCAA
CTGGCCGATG TCAGCGTCTC GCTCAATACC GACATCCTTG CCATTGAACG CCAAGCCGAT
GGCTGGGTTT TGTTGACTGA AAAGGAACGT TTCGGGCCCT TTGCACAACT TGTACTCGCC
AATGGCGCAG AATTGACACA ATTTGATGCC AGCAACAAAT TACAAATTAG CCCCTTTCGC
GGCCAAGTCA GCCATGTGCC CGCTCAATTT CAATTGAGTC AGCTCGCAAC TGTGCTGTGC
GCCAACGGTT ATTTAACGCC GAGTCACCAA GGACTCCACT GCCTTGGCGC AAGTTACGTT
AAAGAGCCTG AACATTTAGA TTTTTGCCCG CAGGAACAAC AAGAAAACCT CATGAAAATG
CACGAGAGTT ATCCGAACCA AAGCTGGCTT GCAGATATCG ACATGAGTGA CAACAATGCC
CGCGTCGGCG TGCGTATGGT GACGCGGGAT CATTTCCCTA TGATGGGCTG CGCGCCCGAT
GTGGCGAAAA TCCTTGAGGA TTATGCGCAA CATCAACTCA CTAAAGAAAG TCGCCACTAC
TGGCAAACCA CGCCAGCACC CGTGCATCAA GGACTGTATA TTCTTGGTGG GTTAGGCTCA
CGGGGACTAA GTTCTGGGCC ACTGGCCGCC GAATGTCTTG CGGCGCAGCT TTGCGGCGAA
CCAATACCGC TCGATAAAGA AACCCTGTGT AAACTCAACC CCAATCGCAT GTGGCTGCGA
AAATTGCTCA AGGGTAAAGC GCTCTAG
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| Protein sequence | MTAEPNKPCQ IKRDYQQLIN LYPATADTDA HYLSKLSIYQ QRVFEAHSQQ KLLVLGQIGL
GNGLELLSWW RTQANPSQRL LLKVFEPNPI NAYELKSLWD QSLTLVKETP FEPHLESKQA
SALECKSKLS QLAQTLLDAE PTAIIGCQRL IFDDGRTTID LHFGDIQTQL SSLSHSPMHP
VQHWLILPHL LQALHHQSHW QMAKLSDDSA TIATIGLSES SGLSETTVNR FQACGFTVSD
INKLATKALG IHQPVTLINH QLDTVLLHER QVLRQQDAKA YAFNPMAAIL SSATQSSIAI
IGGGLASAHL ALSLAERGQG AQVFCKDAEL GQGASGNRQG AIYPLLTPEN DELSRFFQQA
FLFSRRRVQA LTSAPANNQT PISHNFCGVL QTAHDERSQL RLDKIIQGQP WPSEIAYAVD
AEQANAIAKI NLDKPGFFYP LGGWVCPFEY ADAAIQKAMQ LADVSVSLNT DILAIERQAD
GWVLLTEKER FGPFAQLVLA NGAELTQFDA SNKLQISPFR GQVSHVPAQF QLSQLATVLC
ANGYLTPSHQ GLHCLGASYV KEPEHLDFCP QEQQENLMKM HESYPNQSWL ADIDMSDNNA
RVGVRMVTRD HFPMMGCAPD VAKILEDYAQ HQLTKESRHY WQTTPAPVHQ GLYILGGLGS
RGLSSGPLAA ECLAAQLCGE PIPLDKETLC KLNPNRMWLR KLLKGKAL
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