| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0066 |
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| Symbol | mnmC |
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| ID | 6177449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 74163 |
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| End bp | 76121 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641679801 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001806784 |
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| Protein GI | 172059132 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGACC GACTCGTTCC CGCCACGCTC GCCCGCCGCG ACGACGGCAT TCTCGTCTCG
CCCGAATACG GCGAGCTCCC TCGCGACGCG TCGCACGCTC GCGCGCACGC GAACCGGATG
CTCGCCGGCA CCGGCCTGCC GGCCCACTGG CGGGGCCGCC GCACGTTCAC GATCGTCGAG
ACGGGATTCG GCACGGGCAG CCGTTTTCTC GCGACGTGGG CCGCATGGCG CGACGACCCG
GCACGCTGCG AGCGGCTGCA TTTCGTCGCG ATCGAACCGC ATCCGTTCGC GCGCGACGAC
CTGCGCCGCG CCGTTTCGAA TTTCGTTGCT GACACAACCA TATCGGAAAA TGCCGACGCT
TTGCTCGACG CGTGGCCGAT GCATGTGCCC GGCCTGCACC GGCTCGAATT CGACGCGGGA
CGCGTGGTGC TCACGCTCGC ATTCGGCGAT GCGCATGACA TGCTGCAACG GCTCGTCGCG
CGCGCCGACG CGTTCTATCT CGGCAATCTC GCGTCGGCCG CGCACGGCGA TGTGCTGTCG
GCCGACGTGA TCCGCGCGCT CGCACGCATC GCCGCCGACG GTGCGACTTA TGCGACGCAT
TCGCACGACG ACGCCGTGAA ACATGCGCTC GAGCAAACGG GTTTCACGAG TCGTGACGTC
GAGGATGGCG CAGGCGAGCC CGCATTGCGC GTCGGCGAAT ACGCGCCGCG CTGGCGGATG
CGGCGGCACG AACCACCGCG TGCATTGCCG GTTGCCTCGC GCGAAGCGAT CGTGATCGGT
GCGGGCCTGG CCGGCTGCGC GGTCGTCGAA CGGCTCGCCG CGCGCGGCTG GAACATCACG
CTGATCGAGC GGCACGAGCA GATCGCGAGC GAGGCATCGG GCAATCCGGC CGGTGTATTC
CATCCATTGA TGACGCGCGA CGACAACGTC GCGAGCCGCC TCACGCGCAG CGGGTTCCTG
CATGCGCTCG CACGCTGGCG CGCGCTCGAG GAGGCGGGCC ATGCGTTCGC GCGCAGCACG
CGCGGGATGA TCCATCTCGC GGAATCGGCC GACGATTTCG CGCGGATGCG CGATGCGTTC
GATGCGCTCG GCGCACCGTC CGACTATGTG TCGCTGCTCG ATACGGACGC CGCCCGCGCG
CATCTGAACC TGCCGGTCGC GCACGGCGGC CTGCTGTTTC CACACGGCGG CGCCGTCTGG
CCGGCCGGGG TGTGCGCGGC GCAAATCGCG GCGGCCGGCG AACGCGTGAA ACTGCTGGCC
GGCACCGAAG TCGCCCGGCT CGAGCGTGAT CGCGACATGT GGCGCGCCGT CGATGCGGCA
AGCGCGACGC TCGCCGAAGC GCCGGTCGTC GTGCTCGCGA ACGCGGGCGA CGCGGTGCGT
CTCGCGGGCC TGCGGCACGT CGCGCTGCAA CCGGTGCGCG GCCAGCTCAC GCTGCTGCCG
CCCGGCAGCA CGGCGCCGCT GCCGTGCCCC ACGATCGGCG ACGGCTACGC GGTGCCGCTC
GACGACGGCA CGCTGCTGAT CGGCGCGACG TTCGAACCCG ACGACGTCGA CCGGACGATG
CGCACCGCCG GACATATCGA AAACCTGGAG CGCGTCCGGC ATCTGCTGCC CGGCCTGATC
GGCGAGCTGC CGGACGTCGA TACGCTGCGC GGGCGCGTCG CGTTTCGCTG GGTCGTCGCC
GACCGCGTGC CGGTGATCGG CCCGCTCGCC GACGAAGCGC AGGGCGTCGC GAACGCCCGC
GCGCTGAGCG GCGCGAAAGC GCGCGACCTG CCGCGCGCCG CGGGCCTCTA CGGCGCCTTC
GGCTACGGCT CCCGCGGCCT CGTCTGGGCG GCGCTCGGCG CCGAGCTGAT CGCGTCGCAA
CTCGAAGGCG AGCCGCTGCC GCTCGAGCGG GAACTCGTCG ACGCCGTCGA TCCGGCCCGG
TTCCTGATCC GCGCGCTGCG CGGCCGCCAG ATCGGCTGA
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| Protein sequence | MPDRLVPATL ARRDDGILVS PEYGELPRDA SHARAHANRM LAGTGLPAHW RGRRTFTIVE
TGFGTGSRFL ATWAAWRDDP ARCERLHFVA IEPHPFARDD LRRAVSNFVA DTTISENADA
LLDAWPMHVP GLHRLEFDAG RVVLTLAFGD AHDMLQRLVA RADAFYLGNL ASAAHGDVLS
ADVIRALARI AADGATYATH SHDDAVKHAL EQTGFTSRDV EDGAGEPALR VGEYAPRWRM
RRHEPPRALP VASREAIVIG AGLAGCAVVE RLAARGWNIT LIERHEQIAS EASGNPAGVF
HPLMTRDDNV ASRLTRSGFL HALARWRALE EAGHAFARST RGMIHLAESA DDFARMRDAF
DALGAPSDYV SLLDTDAARA HLNLPVAHGG LLFPHGGAVW PAGVCAAQIA AAGERVKLLA
GTEVARLERD RDMWRAVDAA SATLAEAPVV VLANAGDAVR LAGLRHVALQ PVRGQLTLLP
PGSTAPLPCP TIGDGYAVPL DDGTLLIGAT FEPDDVDRTM RTAGHIENLE RVRHLLPGLI
GELPDVDTLR GRVAFRWVVA DRVPVIGPLA DEAQGVANAR ALSGAKARDL PRAAGLYGAF
GYGSRGLVWA ALGAELIASQ LEGEPLPLER ELVDAVDPAR FLIRALRGRQ IG
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