Gene Bcen2424_0066 details

Gene Information

• Locus tag: Bcen2424_0066
• Symbol: mnmC
• ID: 4448773
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia cenocepacia HI2424
• Kingdom: Bacteria
• Replicon accession: NC_008542
• Strand: +
• Start bp: 67230
• End bp: 69161
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 639692073
• Product: 5-methylaminomethyl-2-thiouridine methyltransferase
• Protein accession: YP_833713
• Protein GI: 116688090
• COG category: [E] Amino acid transport and metabolism; [S] Function unknown
• COG ID: [COG0665] Glycine/D-amino acid oxidases (deaminating); [COG4121] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGACC GACTTGTTTC CGCCACGCTC GCGCTTCGCG ACGACGGCAC GCTCGTCTCG 
CCCGAGTTCG GCGAGCTTCA TCGCGGTGCA TCCGGCACGC TCGCTCGCGC GCATCGCACG 
TTCGTCGCGG GCAACGGGCT GCCCGCGCGC TGGCAGCGCC GCCGAACGTT CACGATCGTC 
ACGACCGCGT TCGGCGCGGG CGCCGGCTTC CTCGCGGCCT GGGCCGCGTG GCGCGACGAT 
CCCGCGCGCT GCGAACGGCT GCACGTCGTC GCGGTCGAAC CGCATCCGTT CTCGCGCGAC 
GACCTGCACC GCGCGGTCTC GCATATGGTT GTAGACACAA CCATATCGGC AGACGTCGAC 
GCGTTGCTCG ATGCCTGGCC GATACTCGTG CCGGGCCTGC ACCGGCTCGA ATTCGACGAA 
GGGCGCGTGG TGCTCACGCT CGCGTTCGGC GATACGATCG ACTTGTTGAA GAAGCTCGTC 
GCGCGCGCCG ATGCGTTTTT TCTCGACGGC GCCGCGGCAT CGGGCGACGG GATTCGCGCA 
CTCGCGAAAC TCGCCGGCGA ACACGCGACG TTTGCGACGC ATGCAAAGTC CGACGACGTG 
AAACACGCGC TCGGCGAAAC AGGTTTCACG TTCCGCGAAG TCGACGATCG CCTCGTCGGC 
GACTATGCGC CGCGCTGGCG CGCGCGCCGG CACGAGCCGC CGCGTGCGCT GCCCGTTGCC 
GCGCGCCGCG CGATCGTGAT CGGCGCGGGT CTCGCCGGCT GCGCGGTGGT CGAACGGCTG 
GCCGCGCGCG GCTGGGACGT CACGCTGATC GAACGGCACG AACGGATCGC GAGCGAAGCG 
TCGGGCAATC CGGCCGGTGT GTTCCATCCA TTGATGACGC GCGATGACAA CGTCGCGAGC 
CGGCTCACGC GCGGCGGCTT CCTGCACGCG CTCGCACGCT GGCGTGCGCT CGAACGCGCG 
GGGCATGCAT TCTCACGCAG CACGCACGGG ATGCTCCATC TCGCCGAATC GGCCGACGAT 
TTCGCGCGGA TGCGCGACGC GTTCGACGCG TTCGGGCCGC CGTCCGACTA TGCAACGCTG 
CTCGATGCCG ATGCCGCGCG GGCGCACCTG AATCTGCCGG TCGCGCAGGG CGGCCTGCTG 
TTTCCGCACG GCGGCGCCGT GTGGCCGGCC GGGCTGTGCG TCGCGCAGTA TGCGGCGGCC 
GGCGAGCGCG TGCGGCTGCT GGCGTCCACC TGCGTCGCAC GGCTCGAACG GCGGGACGAC 
ACCTGGCATG CACTCGACGA TACCGGCGCC ACGCTGGCCG ATGCGCCCGT CGTCGTGCTC 
GCGAACGCGG GCGACGCCGC GCGTCTTGCC GGGCTGCGGC ACGTCACGCT GCAACCGGTG 
CGCGGCCAGC TCACGCTGTT GCCGCCGGGC ACGACGGCGC CGCTGCCGTG CCCGGCGATC 
GGCGACGGTT ACGCGGTCCC GCTCGACGAC GGCACGCTGC TGATCGGCGC CACCTTCGAA 
CCGGACGACA CCGATCCCGC GATGCGCGCG GCCGGCCACG CCGAAAACCT CGATCGCGTG 
CGGCACCTGC TGCCGGGCCT GATCGGCGCG CTGCCGGATC CCGCCACGCT GCGCGGGCGC 
GTCGCATTCC GCTGGGTCGT CGGCGACCGC CTGCCGCTCA TCGGCCCGCT CGCCGACGAA 
ACGCAGGCCA CCGCGAACGC ACGCGCGCTG GGCGGTGCGC AGGCGCGCGA CCTGCCGCGC 
ATGCCGGGCC TCTACGGCGC CTTCGGCTTC GGTTCGCGCG GCCTCGTGTG GGCCGCGCTC 
GGCGCCGAAC TCATCGCATC GCAACTCGAA GGCGAGCCCT GGCCGCTCGA GCGCGAACTC 
GCCGACGCCG TCGATCCCGC CCGCTTCCTG ATCCGCGCAC TGCGCGCCCG CCGCGTCGGC 
TCGGCGGGCT GA 

 

Protein sequence

MPDRLVSATL ALRDDGTLVS PEFGELHRGA SGTLARAHRT FVAGNGLPAR WQRRRTFTIV 
TTAFGAGAGF LAAWAAWRDD PARCERLHVV AVEPHPFSRD DLHRAVSHMV VDTTISADVD 
ALLDAWPILV PGLHRLEFDE GRVVLTLAFG DTIDLLKKLV ARADAFFLDG AAASGDGIRA 
LAKLAGEHAT FATHAKSDDV KHALGETGFT FREVDDRLVG DYAPRWRARR HEPPRALPVA 
ARRAIVIGAG LAGCAVVERL AARGWDVTLI ERHERIASEA SGNPAGVFHP LMTRDDNVAS 
RLTRGGFLHA LARWRALERA GHAFSRSTHG MLHLAESADD FARMRDAFDA FGPPSDYATL 
LDADAARAHL NLPVAQGGLL FPHGGAVWPA GLCVAQYAAA GERVRLLAST CVARLERRDD 
TWHALDDTGA TLADAPVVVL ANAGDAARLA GLRHVTLQPV RGQLTLLPPG TTAPLPCPAI 
GDGYAVPLDD GTLLIGATFE PDDTDPAMRA AGHAENLDRV RHLLPGLIGA LPDPATLRGR 
VAFRWVVGDR LPLIGPLADE TQATANARAL GGAQARDLPR MPGLYGAFGF GSRGLVWAAL 
GAELIASQLE GEPWPLEREL ADAVDPARFL IRALRARRVG SAG