228 homologs were found in PanDaTox collection
for query gene Bcenmc03_0085 on replicon NC_010508
Organism: Burkholderia cenocepacia MC0-3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010508  Bcenmc03_0085  5-methylaminomethyl-2-thiouridine methyltransferase  100 
 
 
643 aa  1248    Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0066  5-methylaminomethyl-2-thiouridine methyltransferase  79.17 
 
 
652 aa  995    Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA2914  5-methylaminomethyl-2-thiouridine methyltransferase  61.46 
 
 
660 aa  711    Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0217  5-methylaminomethyl-2-thiouridine methyltransferase  61.31 
 
 
660 aa  709    Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3248  5-methylaminomethyl-2-thiouridine methyltransferase  86 
 
 
648 aa  1091    Burkholderia sp. 383  Bacteria  normal  normal  0.826772 
 
 
-
 
NC_010084  Bmul_0067  5-methylaminomethyl-2-thiouridine methyltransferase  77.9 
 
 
657 aa  970    Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0003  5-methylaminomethyl-2-thiouridine methyltransferase  62.94 
 
 
657 aa  741    Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4505  5-methylaminomethyl-2-thiouridine methyltransferase  55.3 
 
 
656 aa  662    Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_3066  5-methylaminomethyl-2-thiouridine methyltransferase  53.23 
 
 
655 aa  651    Burkholderia phymatum STM815  Bacteria  normal  normal  0.16811 
 
 
-
 
NC_008060  Bcen_0004  5-methylaminomethyl-2-thiouridine methyltransferase  98.29 
 
 
643 aa  1228    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0056  5-methylaminomethyl-2-thiouridine methyltransferase  79.33 
 
 
652 aa  992    Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0003  5-methylaminomethyl-2-thiouridine methyltransferase  61.46 
 
 
711 aa  710    Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0066  5-methylaminomethyl-2-thiouridine methyltransferase  98.44 
 
 
643 aa  1230    Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3932  5-methylaminomethyl-2-thiouridine methyltransferase  55.98 
 
 
656 aa  669    Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_2973  5-methylaminomethyl-2-thiouridine methyltransferase  61.46 
 
 
711 aa  710    Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3396  5-methylaminomethyl-2-thiouridine methyltransferase  61.89 
 
 
708 aa  717    Burkholderia mallei SAVP1  Bacteria  normal  0.145892  n/a   
 
 
-
 
NC_008836  BMA10229_A1628  5-methylaminomethyl-2-thiouridine methyltransferase  61.46 
 
 
711 aa  710    Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0003  5-methylaminomethyl-2-thiouridine methyltransferase  61.74 
 
 
708 aa  717    Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1709  5-methylaminomethyl-2-thiouridine methyltransferase  47.56 
 
 
657 aa  480  1e-134  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0318232 
 
 
-
 
NC_007973  Rmet_1887  5-methylaminomethyl-2-thiouridine methyltransferase  46.27 
 
 
672 aa  479  1e-134  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1378  5-methylaminomethyl-2-thiouridine methyltransferase  44.7 
 
 
668 aa  475  1e-133  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1871  5-methylaminomethyl-2-thiouridine methyltransferase  44.38 
 
 
672 aa  462  1e-129  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0302238 
 
 
-
 
NC_012856  Rpic12D_1538  5-methylaminomethyl-2-thiouridine methyltransferase  44.68 
 
 
672 aa  458  1e-127  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0998844 
 
 
-
 
NC_007298  Daro_2850  5-methylaminomethyl-2-thiouridine methyltransferase  41.13 
 
 
644 aa  422  1e-117  Dechloromonas aromatica RCB  Bacteria  normal  0.413253  normal  0.437245 
 
 
-
 
NC_011662  Tmz1t_1956  5-methylaminomethyl-2-thiouridine methyltransferase  43.64 
 
 
644 aa  395  1e-108  Thauera sp. MZ1T  Bacteria  normal  0.243551  n/a   
 
 
-
 
NC_007947  Mfla_1390  hypothetical protein  37.02 
 
 
622 aa  310  4e-83  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.909333 
 
 
-
 
NC_008825  Mpe_A1964  hypothetical protein  38.74 
 
 
653 aa  310  4e-83  Methylibium petroleiphilum PM1  Bacteria  normal  0.117707  normal 
 
 
-
 
NC_007404  Tbd_1641  5-methylaminomethyl-2-thiouridine methyltransferase  38.91 
 
 
616 aa  308  1.0000000000000001e-82  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.168869  normal 
 
 
-
 
NC_009439  Pmen_3230  5-methylaminomethyl-2-thiouridine methyltransferase  36.46 
 
 
657 aa  308  2.0000000000000002e-82  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1639  oxidoreductase, FAD-binding protein  35.5 
 
 
660 aa  296  5e-79  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.562541  n/a   
 
 
-
 
NC_007005  Psyr_3742  5-methylaminomethyl-2-thiouridine methyltransferase  34.96 
 
 
665 aa  296  7e-79  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.0063824 
 
 
-
 
NC_010524  Lcho_2054  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  37.07 
 
 
655 aa  286  8e-76  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00149668 
 
 
-
 
NC_011901  Tgr7_1861  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  35.2 
 
 
661 aa  286  1.0000000000000001e-75  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4098  5-methylaminomethyl-2-thiouridine methyltransferase  34.74 
 
 
659 aa  278  2e-73  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_34940  5-methylaminomethyl-2-thiouridine methyltransferase  36.67 
 
 
653 aa  268  2e-70  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0704  hypothetical protein  36.08 
 
 
699 aa  261  3e-68  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1343  5-methylaminomethyl-2-thiouridine methyltransferase  33.73 
 
 
654 aa  261  3e-68  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_0743  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  32.31 
 
 
668 aa  259  1e-67  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19400  5-methylaminomethyl-2-thiouridine methyltransferase  36.28 
 
 
654 aa  257  4e-67  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0825831  normal 
 
 
-
 
NC_008781  Pnap_2424  hypothetical protein  33.96 
 
 
637 aa  253  7e-66  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl1494  hypothetical protein  26.64 
 
 
666 aa  251  2e-65  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_1671  5-methylaminomethyl-2-thiouridine methyltransferase  35.73 
 
 
654 aa  250  5e-65  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_002947  PP_1751  5-methylaminomethyl-2-thiouridine methyltransferase  33.78 
 
 
654 aa  248  2e-64  Pseudomonas putida KT2440  Bacteria  normal  0.266449  normal 
 
 
-
 
NC_009512  Pput_3963  5-methylaminomethyl-2-thiouridine methyltransferase  33.78 
 
 
654 aa  248  3e-64  Pseudomonas putida F1  Bacteria  normal  0.94523  normal  0.0279642 
 
 
-
 
NC_007520  Tcr_0130  hypothetical protein  30.39 
 
 
674 aa  246  6.999999999999999e-64  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.000346728  n/a   
 
 
-
 
NC_006368  lpp1489  hypothetical protein  25.74 
 
 
666 aa  246  9.999999999999999e-64  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_1359  5-methylaminomethyl-2-thiouridine methyltransferase  33.54 
 
 
657 aa  240  6.999999999999999e-62  Pseudomonas putida W619  Bacteria  normal  0.490609  normal  0.307096 
 
 
-
 
NC_007948  Bpro_2343  hypothetical protein  34.93 
 
 
637 aa  233  8.000000000000001e-60  Polaromonas sp. JS666  Bacteria  normal  0.955559  normal 
 
 
-
 
NC_009654  Mmwyl1_3401  hypothetical protein  28.43 
 
 
674 aa  229  1e-58  Marinomonas sp. MWYL1  Bacteria  normal  0.473665  normal 
 
 
-
 
NC_008782  Ajs_1796  hypothetical protein  33.63 
 
 
639 aa  228  3e-58  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1694  5-methylaminomethyl-2-thiouridine methyltransferase  29.41 
 
 
674 aa  225  2e-57  Vibrio cholerae O395  Bacteria  hitchhiker  0.00252388  n/a   
 
 
-
 
NC_011992  Dtpsy_1926  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  33.18 
 
 
639 aa  223  8e-57  Acidovorax ebreus TPSY  Bacteria  normal  0.218262  n/a   
 
 
-
 
NC_012912  Dd1591_1358  5-methylaminomethyl-2-thiouridine methyltransferase  31.43 
 
 
672 aa  221  3.9999999999999997e-56  Dickeya zeae Ech1591  Bacteria  normal  0.0608182  n/a   
 
 
-
 
NC_012791  Vapar_2983  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  34.92 
 
 
620 aa  219  2e-55  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2806  5-methylaminomethyl-2-thiouridine methyltransferase  30.57 
 
 
675 aa  218  2e-55  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.641074  n/a   
 
 
-
 
NC_011312  VSAL_I1070  5-methylaminomethyl-2-thiouridine methyltransferase  27.38 
 
 
680 aa  217  5e-55  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.388206  n/a   
 
 
-
 
NC_008752  Aave_3048  hypothetical protein  32.06 
 
 
635 aa  216  9.999999999999999e-55  Acidovorax citrulli AAC00-1  Bacteria  normal  0.115559  normal  0.0258128 
 
 
-
 
NC_010002  Daci_4644  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  33.54 
 
 
645 aa  214  3.9999999999999995e-54  Delftia acidovorans SPH-1  Bacteria  normal  0.683342  hitchhiker  0.0000257745 
 
 
-
 
NC_008576  Mmc1_2377  hypothetical protein  31.53 
 
 
667 aa  213  7e-54  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.954774 
 
 
-
 
NC_008228  Patl_3384  hypothetical protein  28.13 
 
 
705 aa  212  2e-53  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1458  5-methylaminomethyl-2-thiouridine methyltransferase  29.51 
 
 
675 aa  210  5e-53  Pectobacterium wasabiae WPP163  Bacteria  normal  0.622829  n/a   
 
 
-
 
NC_012880  Dd703_2586  5-methylaminomethyl-2-thiouridine methyltransferase  31.19 
 
 
675 aa  209  1e-52  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1170  hypothetical protein  30.64 
 
 
631 aa  205  2e-51  Marinobacter aquaeolei VT8  Bacteria  normal  0.285143  n/a   
 
 
-
 
NC_011353  ECH74115_3465  5-methylaminomethyl-2-thiouridine methyltransferase  27.79 
 
 
668 aa  204  5e-51  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2475  5-methylaminomethyl-2-thiouridine methyltransferase  27.88 
 
 
668 aa  203  6e-51  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1328  5-methylaminomethyl-2-thiouridine methyltransferase  27.88 
 
 
668 aa  203  6e-51  Escherichia coli ATCC 8739  Bacteria  normal  0.831924  normal 
 
 
-
 
NC_009783  VIBHAR_03106  5-methylaminomethyl-2-thiouridine methyltransferase  28.15 
 
 
672 aa  203  8e-51  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011149  SeAg_B2519  5-methylaminomethyl-2-thiouridine methyltransferase  29.08 
 
 
666 aa  201  1.9999999999999998e-50  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02249  hypothetical protein  27.58 
 
 
668 aa  201  5e-50  Escherichia coli BL21(DE3)  Bacteria  normal  0.425785  n/a   
 
 
-
 
CP001637  EcDH1_1332  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  27.58 
 
 
668 aa  200  5e-50  Escherichia coli DH1  Bacteria  normal  0.602375  n/a   
 
 
-
 
NC_012892  B21_02209  hypothetical protein  27.58 
 
 
668 aa  201  5e-50  Escherichia coli BL21  Bacteria  normal  0.334228  n/a   
 
 
-
 
NC_010658  SbBS512_E2702  5-methylaminomethyl-2-thiouridine methyltransferase  27.26 
 
 
668 aa  200  7e-50  Shigella boydii CDC 3083-94  Bacteria  normal  0.673186  n/a   
 
 
-
 
NC_009801  EcE24377A_2619  5-methylaminomethyl-2-thiouridine methyltransferase  28.02 
 
 
668 aa  200  7e-50  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2481  5-methylaminomethyl-2-thiouridine methyltransferase  28.24 
 
 
668 aa  200  9e-50  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1221  FAD dependent oxidoreductase  34.15 
 
 
623 aa  198  3e-49  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2608  5-methylaminomethyl-2-thiouridine methyltransferase  28.78 
 
 
666 aa  197  6e-49  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2568  5-methylaminomethyl-2-thiouridine methyltransferase  28.78 
 
 
666 aa  197  7e-49  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.580805  normal 
 
 
-
 
NC_009708  YpsIP31758_1410  5-methylaminomethyl-2-thiouridine methyltransferase  27.66 
 
 
689 aa  196  8.000000000000001e-49  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000203784  n/a   
 
 
-
 
NC_007912  Sde_1471  hypothetical protein  27.71 
 
 
707 aa  196  8.000000000000001e-49  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2732  5-methylaminomethyl-2-thiouridine methyltransferase  28.36 
 
 
666 aa  196  8.000000000000001e-49  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2621  5-methylaminomethyl-2-thiouridine methyltransferase  27.93 
 
 
666 aa  196  9e-49  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00000350397 
 
 
-
 
NC_010465  YPK_1519  5-methylaminomethyl-2-thiouridine methyltransferase  27.66 
 
 
689 aa  196  1e-48  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0252518  n/a   
 
 
-
 
NC_010159  YpAngola_A0372  5-methylaminomethyl-2-thiouridine methyltransferase  27.66 
 
 
689 aa  196  1e-48  Yersinia pestis Angola  Bacteria  hitchhiker  0.000353518  normal 
 
 
-
 
NC_013456  VEA_002869  5-methylaminomethyl-2-thiouridine-forming enzyme MnmC  27.92 
 
 
672 aa  196  1e-48  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00103068  n/a   
 
 
-
 
NC_009436  Ent638_2872  5-methylaminomethyl-2-thiouridine methyltransferase  28.7 
 
 
666 aa  196  2e-48  Enterobacter sp. 638  Bacteria  normal  0.715577  normal  0.0703666 
 
 
-
 
NC_007908  Rfer_2101  FAD dependent oxidoreductase  30.48 
 
 
609 aa  194  3e-48  Rhodoferax ferrireducens T118  Bacteria  normal  0.305312  n/a   
 
 
-
 
NC_007614  Nmul_A1927  hypothetical protein  30.17 
 
 
617 aa  192  1e-47  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.224364  n/a   
 
 
-
 
NC_009832  Spro_3369  5-methylaminomethyl-2-thiouridine methyltransferase  28.19 
 
 
673 aa  191  5e-47  Serratia proteamaculans 568  Bacteria  decreased coverage  0.00235092  normal 
 
 
-
 
NC_003910  CPS_3808  hypothetical protein  23.81 
 
 
682 aa  186  1.0000000000000001e-45  Colwellia psychrerythraea 34H  Bacteria  normal  0.424966  n/a   
 
 
-
 
NC_009802  CCC13826_0496  5-methylaminomethyl-2-thiouridine methyltransferase  25.91 
 
 
621 aa  182  1e-44  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0664  5-methylaminomethyl-2-thiouridine methyltransferase  26 
 
 
676 aa  170  9e-41  Haemophilus somnus 129PT  Bacteria  normal  0.0436264  n/a   
 
 
-
 
NC_008709  Ping_1996  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  24.14 
 
 
690 aa  169  1e-40  Psychromonas ingrahamii 37  Bacteria  normal  0.155036  normal  0.387333 
 
 
-
 
NC_008787  CJJ81176_1284  5-methylaminomethyl-2-thiouridine methyltransferase  21.44 
 
 
613 aa  166  1.0000000000000001e-39  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  hitchhiker  0.000566158  n/a   
 
 
-
 
NC_009707  JJD26997_0457  5-methylaminomethyl-2-thiouridine methyltransferase  20.76 
 
 
613 aa  160  8e-38  Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  0.000000000895922  n/a   
 
 
-
 
NC_003912  CJE1404  5-methylaminomethyl-2-thiouridine methyltransferase  21.21 
 
 
613 aa  155  2e-36  Campylobacter jejuni RM1221  Bacteria  normal  0.628111  n/a   
 
 
-
 
NC_009714  CHAB381_1277  5-methylaminomethyl-2-thiouridine methyltransferase  23.13 
 
 
667 aa  153  1e-35  Campylobacter hominis ATCC BAA-381  Bacteria  normal  0.0226023  n/a   
 
 
-
 
NC_008321  Shewmr4_1421  FAD dependent oxidoreductase  25.65 
 
 
642 aa  151  4e-35  Shewanella sp. MR-4  Bacteria  normal  0.0305521  normal 
 
 
-
 
NC_008322  Shewmr7_1486  FAD dependent oxidoreductase  25.41 
 
 
646 aa  150  8e-35  Shewanella sp. MR-7  Bacteria  normal  0.193166  normal 
 
 
-
 
NC_008577  Shewana3_1474  FAD dependent oxidoreductase  25 
 
 
640 aa  147  6e-34  Shewanella sp. ANA-3  Bacteria  normal  0.123359  normal  0.492 
 
 
-
 
NC_009997  Sbal195_2841  FAD dependent oxidoreductase  25.49 
 
 
708 aa  147  7.0000000000000006e-34  Shewanella baltica OS195  Bacteria  unclonable  0.0000153917  decreased coverage  0.000123138 
 
 
-
 
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