| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0056 |
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| Symbol | mnmC |
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| ID | 4309248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 66181 |
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| End bp | 68139 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638147834 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_771951 |
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| Protein GI | 115350112 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGACC GACTCGTTCC CGCCACGCTC GCCCGCCGCG ACGACGGCAT TCTCGTCTCG
CCCGAATACG GCGAGCTCCC TCGCGACGCG TCGCGCGCTC GCGCGCACGC GAACCGGATG
CTCGCCGGCA CCGGCCTGCT GGCCCGCTGG CAGGGCCGCC GCACGTTCAC GATCGTCGAG
ACCGGATTCG GCACGGGCGG CCGTTTTCTC GCGACGTGGG CCGCATGGCG CGACGACCCC
GCACGCTGCG AGCGGCTGCA TTTCGTCGCG ATCGAAGCGC ATCCGTTCAC GCGCGAGGAC
CTGCGCCGCG CCGTTTCTCA TCTGGTTGCG GACACAACCA TCTCGGAAAA CGCCGACGCT
TTGATCGACG CGTGGCCGAT GCATGTGCCC GGCCTGCACC GGCTCGAATT CGACGCGGGG
CGCGTGGTGC TCACGCTCGC ATTCGGCGAT GCGCGTGACA TGCTGCAACG GCTCGTCGCG
CGCGCCGATG CGTTCTATCT CGGCAATGTC GCGTCGGCCG CGCACGGCGA TGTGCTGTCG
GCCGACGTGA TCCGCGCGCT CGCACGCATC GCCGCCGACG GTGCGACCTA TGCGACGCAT
TCGCACGACG ACACCGTGAA ACATGCGCTC GAGCAAACGG GTTTCACGAG TCGCGACGTC
GAGGATTGCG CAGGCGAGCC CGCGTTGCGC GTCGGCGAAT ACGCACCGCG CTGGCGGATG
CGTCGACACG AACCGCCGCG CGCATTGCCG GTTGCCGCGC GCGAAGCGAT CGTGATCGGT
GCGGGCCTGG CAGGCTGCGC GGTCGTCGAA CGGCTCGCCG CGCGCGGCTG GAACATCACG
CTGATCGAGC GGCACGAACG AATCGCGAGC GAGGCATCGG GCAATCCGGC CGGTGTATTC
CATCCGCTGA TGACGCGCGA CGACAACGTC GCGAGCCGCC TCACGCGCAG CGGCTTCCTG
CATGCGCTCG CACGCTGGCG CGCGCTCGAG GATGCGGGCC ATGCGTTCGC GCGCAGCACG
CGCGGGATGA TCCATCTCGC GGAATCGGCC GACGATTTCG CGCGGATGCG CGATGCGTTC
GATGCGCTCG GCGCACCTTC CGACTATGTG TCGCTGCTCG ATACGGACGC CGCCCGCGCG
CATCTGAACC TGCCGGTCGC ACACGGCGGC CTGCTGTTTC CGCACGGCGG CGCCGTCTGG
CCGGCCGGGG TGTGCGCGGC ACAAATCGCG GCGGCCGGCG AACGCGTAAC ACTGCTGGCC
GGCACCGAAG TCGCCCGGCT CGAGCGCGAT CGCGACATAT GGCGCGCCGT CGATGCGGCA
GGCGCGACGC TCGCCGAAGC GCCGGTCGTC GTGCTCGCGA ACGCGGGCGA CGCGGTGCGT
CTCGCGGGCC TGCGGCACGT TGCGCTGCAA CCGGTGCGCG GCCAGCTCAC GCTGCTGCCG
CCCGGCAGCA CGGCGCCGCT GCCGTGCCCC ACGATCGGCG ACGGCTATGC GGTGCCGCTC
GACGACGGCA CGCTGCTGAT TGGCGCGACG TTCGAACCCG ACGACGTCGA TCGGACGATG
CGCACCGTCG GACATATCGA AAACCTCGCG CGCGTCCGGC ATCTGCTGCC CGGCCTGATC
GGCGAGCTGC CGGACGTCGA TACGCTGCGC GGGCGCGTCG CGTTTCGCTG GGTCGTCGCC
GACCGCGTAC CGGTGATCGG CCCGCTCGCC GACGAAGCGC AGGCCGTCGC GAACGCCCGC
GCGCTGAGCG GCGCGAAAGC GCGCGACCTG CCGCGCACCG CGGGCCTCTA CGGCGCCTTC
GGCTACGGCT CCCGCGGGCT CGTCTGGGCG GCGCTCGGCG CCGAGCTGAT CGCGTCGCAA
CTCGAAGGCG AGCCGCTGCC GCTCGAGCGC GAACTCGTCG ACGCCGTCGA CCCGGCCCGA
TTCCTGATCC GCGCGCTGCG CGGCCGCCAG ATCGGCTGA
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| Protein sequence | MPDRLVPATL ARRDDGILVS PEYGELPRDA SRARAHANRM LAGTGLLARW QGRRTFTIVE
TGFGTGGRFL ATWAAWRDDP ARCERLHFVA IEAHPFTRED LRRAVSHLVA DTTISENADA
LIDAWPMHVP GLHRLEFDAG RVVLTLAFGD ARDMLQRLVA RADAFYLGNV ASAAHGDVLS
ADVIRALARI AADGATYATH SHDDTVKHAL EQTGFTSRDV EDCAGEPALR VGEYAPRWRM
RRHEPPRALP VAAREAIVIG AGLAGCAVVE RLAARGWNIT LIERHERIAS EASGNPAGVF
HPLMTRDDNV ASRLTRSGFL HALARWRALE DAGHAFARST RGMIHLAESA DDFARMRDAF
DALGAPSDYV SLLDTDAARA HLNLPVAHGG LLFPHGGAVW PAGVCAAQIA AAGERVTLLA
GTEVARLERD RDIWRAVDAA GATLAEAPVV VLANAGDAVR LAGLRHVALQ PVRGQLTLLP
PGSTAPLPCP TIGDGYAVPL DDGTLLIGAT FEPDDVDRTM RTVGHIENLA RVRHLLPGLI
GELPDVDTLR GRVAFRWVVA DRVPVIGPLA DEAQAVANAR ALSGAKARDL PRTAGLYGAF
GYGSRGLVWA ALGAELIASQ LEGEPLPLER ELVDAVDPAR FLIRALRGRQ IG
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