More than 300 homologs were found in PanDaTox collection
for query gene Rru_A0080 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A0080  chemotaxis sensory transducer  100 
 
 
362 aa  723    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0081  chemotaxis sensory transducer  85.04 
 
 
362 aa  620  1e-176  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0082  chemotaxis sensory transducer  71.94 
 
 
359 aa  513  1e-144  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3960  methyl-accepting chemotaxis sensory transducer  55.26 
 
 
367 aa  372  1e-102  Caulobacter sp. K31  Bacteria  normal  0.273719  normal  0.409706 
 
 
-
 
NC_009485  BBta_3999  methyl-accepting chemotaxis sensory transducer  52.34 
 
 
362 aa  364  1e-99  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.80171  normal 
 
 
-
 
NC_010511  M446_3313  methyl-accepting chemotaxis sensory transducer  55.23 
 
 
361 aa  363  3e-99  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0006  methyl-accepting chemotaxis sensory transducer  54.47 
 
 
359 aa  357  9.999999999999999e-98  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.906877  normal 
 
 
-
 
NC_011757  Mchl_4260  methyl-accepting chemotaxis sensory transducer  56.36 
 
 
352 aa  350  3e-95  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3892  putative methyl-accepting chemotaxis protein  56.36 
 
 
352 aa  349  4e-95  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.344749 
 
 
-
 
NC_007925  RPC_4930  methyl-accepting chemotaxis sensory transducer  53.3 
 
 
362 aa  346  4e-94  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.226636 
 
 
-
 
NC_010725  Mpop_4363  methyl-accepting chemotaxis sensory transducer  55.39 
 
 
345 aa  344  1e-93  Methylobacterium populi BJ001  Bacteria  normal  0.139679  normal  0.610806 
 
 
-
 
NC_010505  Mrad2831_5068  methyl-accepting chemotaxis sensory transducer  54.6 
 
 
371 aa  342  5e-93  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0531667 
 
 
-
 
NC_010725  Mpop_1930  methyl-accepting chemotaxis sensory transducer  53.24 
 
 
366 aa  342  5.999999999999999e-93  Methylobacterium populi BJ001  Bacteria  normal  0.702252  normal  0.0243578 
 
 
-
 
NC_011757  Mchl_2252  methyl-accepting chemotaxis sensory transducer  51.73 
 
 
364 aa  331  1e-89  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1975  chemotaxis sensory transducer  51.73 
 
 
364 aa  331  1e-89  Methylobacterium extorquens PA1  Bacteria  normal  0.129929  normal 
 
 
-
 
NC_007347  Reut_A0771  methyl-accepting chemotaxis sensory transducer  52.66 
 
 
409 aa  330  2e-89  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1126  methyl-accepting chemotaxis sensory transducer  48.67 
 
 
351 aa  311  7.999999999999999e-84  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2724  methyl-accepting chemotaxis sensory transducer  48.51 
 
 
341 aa  293  3e-78  Sphingomonas wittichii RW1  Bacteria  normal  0.894036  normal 
 
 
-
 
NC_012850  Rleg_1080  methyl-accepting chemotaxis sensory transducer  45 
 
 
368 aa  259  5.0000000000000005e-68  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0931  methyl-accepting chemotaxis sensory transducer  45 
 
 
368 aa  256  4e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.219476  normal  0.828358 
 
 
-
 
NC_011989  Avi_1377  methyl-accepting chemotaxis protein  42.55 
 
 
370 aa  251  9.000000000000001e-66  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2343  methyl-accepting chemotaxis sensory transducer  32.96 
 
 
377 aa  193  5e-48  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1064  methyl-accepting chemotaxis sensory transducer with Cache sensor  28.32 
 
 
334 aa  120  3.9999999999999996e-26  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1760  CheW protein  32.64 
 
 
875 aa  106  6e-22  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2970  CheW protein  31.62 
 
 
841 aa  88.2  2e-16  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0470  CheW protein  32.91 
 
 
848 aa  82.4  0.00000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1709  hypothetical protein  26.91 
 
 
668 aa  81.6  0.00000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1071  CheW protein  27.8 
 
 
891 aa  79.3  0.00000000000008  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_2145  hypothetical protein  23.35 
 
 
692 aa  73.6  0.000000000006  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1849  methyl-accepting chemotaxis sensory transducer  41.35 
 
 
570 aa  66.6  0.0000000007  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003063  methyl-accepting chemotaxis protein  38.53 
 
 
682 aa  65.5  0.000000001  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01378  methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor  50.67 
 
 
546 aa  64.7  0.000000002  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2225  methyl-accepting chemotaxis sensory transducer  50.67 
 
 
546 aa  64.7  0.000000002  Escherichia coli DH1  Bacteria  normal  0.213228  n/a   
 
 
-
 
NC_009801  EcE24377A_1600  methyl-accepting chemotaxis protein III  50.67 
 
 
546 aa  64.7  0.000000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1804  methyl-accepting chemotaxis protein III  45.12 
 
 
535 aa  65.1  0.000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1716  methyl-accepting chemotaxis protein III  45.12 
 
 
541 aa  65.1  0.000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0288519 
 
 
-
 
NC_010468  EcolC_2238  methyl-accepting chemotaxis sensory transducer  50.67 
 
 
546 aa  64.7  0.000000002  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000502  methyl-accepting chemotaxis protein  34.13 
 
 
589 aa  65.1  0.000000002  Vibrio sp. Ex25  Bacteria  normal  0.567249  n/a   
 
 
-
 
NC_009800  EcHS_A1503  methyl-accepting chemotaxis protein III  50.67 
 
 
546 aa  64.7  0.000000002  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1531  methyl-accepting chemotaxis protein III  45.12 
 
 
541 aa  65.1  0.000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4454  methyl-accepting chemotaxis sensory transducer  45.24 
 
 
653 aa  65.5  0.000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.625525  n/a   
 
 
-
 
NC_012892  B21_01390  hypothetical protein  50.67 
 
 
546 aa  64.7  0.000000002  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1753  methyl-accepting chemotaxis protein III  50.67 
 
 
546 aa  64.7  0.000000002  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  2.79367e-17 
 
 
-
 
NC_011080  SNSL254_A1740  methyl-accepting chemotaxis protein III  45.12 
 
 
541 aa  65.1  0.000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_2026  methyl-accepting chemotaxis protein III  50.67 
 
 
470 aa  64.7  0.000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000000214401 
 
 
-
 
NC_011094  SeSA_A1744  methyl-accepting chemotaxis protein III  45.12 
 
 
535 aa  65.1  0.000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.693576  normal  0.460124 
 
 
-
 
NC_008347  Mmar10_2299  methyl-accepting chemotaxis sensory transducer  40.78 
 
 
182 aa  65.5  0.000000002  Maricaulis maris MCS10  Bacteria  normal  normal  0.741118 
 
 
-
 
NC_011004  Rpal_0435  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  48.53 
 
 
560 aa  64.7  0.000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.617966  n/a   
 
 
-
 
NC_009656  PSPA7_2287  putative chemotaxis transducer  48.1 
 
 
490 aa  63.9  0.000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0436901  n/a   
 
 
-
 
NC_009664  Krad_4271  methyl-accepting chemotaxis sensory transducer  50.68 
 
 
535 aa  63.9  0.000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.79817  normal  0.653673 
 
 
-
 
NC_009485  BBta_2308  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.76 
 
 
571 aa  63.9  0.000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.643806  normal 
 
 
-
 
NC_009831  Ssed_1066  methyl-accepting chemotaxis sensory transducer  47.83 
 
 
705 aa  63.9  0.000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4022  chemotaxis sensory transducer  48.1 
 
 
493 aa  63.9  0.000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1838  methyl-accepting chemotaxis sensory transducer  46.43 
 
 
667 aa  63.9  0.000000004  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3240  methyl-accepting chemotaxis sensory transducer  34.17 
 
 
533 aa  63.9  0.000000004  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1961  methyl-accepting chemotaxis sensory transducer  46.34 
 
 
563 aa  63.9  0.000000004  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3087  methyl-accepting chemotaxis sensory transducer  34.17 
 
 
522 aa  63.9  0.000000004  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_27000  putative chemotaxis transducer  48.1 
 
 
490 aa  63.9  0.000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1535  methyl-accepting chemotaxis sensory transducer  46.59 
 
 
574 aa  63.9  0.000000004  Dickeya zeae Ech1591  Bacteria  normal  0.241891  n/a   
 
 
-
 
NC_013202  Hmuk_1635  methyl-accepting chemotaxis sensory transducer  46.34 
 
 
529 aa  63.5  0.000000005  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_013202  Hmuk_1755  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.74 
 
 
634 aa  63.5  0.000000005  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.0373336  normal  0.88588 
 
 
-
 
NC_009456  VC0395_0606  methyl-accepting chemotaxis protein  40 
 
 
587 aa  63.5  0.000000005  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2865  methyl-accepting chemotaxis sensory transducer  32.35 
 
 
722 aa  63.5  0.000000006  Pseudomonas putida W619  Bacteria  normal  normal  0.370999 
 
 
-
 
NC_011004  Rpal_4271  methyl-accepting chemotaxis sensory transducer  50.68 
 
 
567 aa  63.5  0.000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02788  hypothetical protein  41.57 
 
 
698 aa  63.2  0.000000006  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012880  Dd703_1507  methyl-accepting chemotaxis sensory transducer  45.45 
 
 
573 aa  63.2  0.000000007  Dickeya dadantii Ech703  Bacteria  normal  0.273861  n/a   
 
 
-
 
NC_009665  Shew185_3097  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
522 aa  63.2  0.000000007  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4118  methyl-accepting chemotaxis sensory transducer  36.69 
 
 
567 aa  63.2  0.000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_4172  methyl-accepting chemotaxis sensory transducer  41.9 
 
 
653 aa  63.2  0.000000008  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05387  histidine kinase  33.33 
 
 
589 aa  62.8  0.000000008  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011004  Rpal_5165  methyl-accepting chemotaxis sensory transducer  43.82 
 
 
559 aa  62.8  0.000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2987  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  30.33 
 
 
522 aa  63.2  0.000000008  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2091  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.3 
 
 
559 aa  63.2  0.000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.382764  n/a   
 
 
-
 
NC_012039  Cla_1032  MCP-domain signal transduction protein  40 
 
 
375 aa  62.8  0.000000009  Campylobacter lari RM2100  Bacteria  normal  0.60166  n/a   
 
 
-
 
NC_009616  Tmel_0851  methyl-accepting chemotaxis sensory transducer  50.85 
 
 
765 aa  62.8  0.000000009  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2522  methyl-accepting chemotaxis domain-containing protein  39.64 
 
 
605 aa  62.8  0.000000009  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000107886  n/a   
 
 
-
 
NC_008322  Shewmr7_3698  methyl-accepting chemotaxis sensory transducer  38.95 
 
 
463 aa  62.8  0.000000009  Shewanella sp. MR-7  Bacteria  normal  0.246306  normal  0.556215 
 
 
-
 
NC_002947  PP_2310  methyl-accepting chemotaxis sensory transducer  46.84 
 
 
492 aa  62.4  0.00000001  Pseudomonas putida KT2440  Bacteria  normal  0.178377  decreased coverage  0.00000773933 
 
 
-
 
NC_004347  SO_1385  methyl-accepting chemotaxis protein  31.09 
 
 
520 aa  62.4  0.00000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_5569  methyl-accepting chemotaxis protein  38.32 
 
 
541 aa  62.8  0.00000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0488  methyl-accepting chemotaxis protein  34.82 
 
 
660 aa  62.4  0.00000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2059  histidine kinase, HAMP region: chemotaxis sensory transducer  50 
 
 
491 aa  62.4  0.00000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.116428  normal  0.539616 
 
 
-
 
NC_009512  Pput_3459  methyl-accepting chemotaxis sensory transducer  46.84 
 
 
492 aa  62.4  0.00000001  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.000433284 
 
 
-
 
NC_007492  Pfl01_0622  chemotaxis sensory transducer  45.35 
 
 
648 aa  62.4  0.00000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1516  methyl-accepting chemotaxis sensory transducer  33.93 
 
 
660 aa  62.4  0.00000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1912  methyl-accepting chemotaxis sensory transducer  46.84 
 
 
492 aa  62  0.00000001  Pseudomonas putida GB-1  Bacteria  normal  0.407863  hitchhiker  0.000000143908 
 
 
-
 
NC_012880  Dd703_0071  methyl-accepting chemotaxis sensory transducer  42.68 
 
 
630 aa  62.4  0.00000001  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0323  methyl-accepting chemotaxis sensory transducer with Cache sensor  48.53 
 
 
690 aa  62.4  0.00000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0601  methyl-accepting chemotaxis sensory transducer  35.76 
 
 
653 aa  62.8  0.00000001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1534  methyl-accepting chemotaxis sensory transducer  40.45 
 
 
297 aa  62.4  0.00000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0556  methyl-accepting chemotaxis sensory transducer with Cache sensor  48.53 
 
 
690 aa  62.4  0.00000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1280  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.33 
 
 
522 aa  62.4  0.00000001  Shewanella baltica OS223  Bacteria  normal  normal  0.160306 
 
 
-
 
NC_008321  Shewmr4_0326  methyl-accepting chemotaxis sensory transducer  38.95 
 
 
463 aa  62.8  0.00000001  Shewanella sp. MR-4  Bacteria  normal  0.876228  normal 
 
 
-
 
NC_012918  GM21_1294  methyl-accepting chemotaxis sensory transducer  58.06 
 
 
686 aa  62  0.00000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  4.66893e-19 
 
 
-
 
NC_008345  Sfri_0336  methyl-accepting chemotaxis sensory transducer  46.05 
 
 
500 aa  62.4  0.00000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3407  methyl-accepting chemotaxis sensory transducer  46.43 
 
 
545 aa  62.4  0.00000001  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0607  methyl-accepting chemotaxis sensory transducer  44.44 
 
 
653 aa  61.2  0.00000002  Pseudomonas putida GB-1  Bacteria  normal  normal  0.100705 
 
 
-
 
NC_009485  BBta_7334  putative methyl-accepting chemotaxis protein  52.73 
 
 
685 aa  62  0.00000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.382599  normal 
 
 
-
 
NC_009439  Pmen_1902  methyl-accepting chemotaxis sensory transducer  39.8 
 
 
521 aa  61.6  0.00000002  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00326538  normal  0.948878 
 
 
-
 
NC_007925  RPC_3161  methyl-accepting chemotaxis sensory transducer  45.33 
 
 
731 aa  61.6  0.00000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.072786  normal 
 
 
-
 
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