| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1280 |
|---|
| Symbol | |
|---|
| ID | 7089843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 1512344 |
|---|
| End bp | 1513912 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643460185 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
|---|
| Protein accession | YP_002357212 |
|---|
| Protein GI | 217972461 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.160306 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGA GTAACGCGTC TGCCAACAGA ACACTGAATG CACAGAGATC AGATCAAGAA
ATCCGCTTAA CACCACAGGA CGAACTCATC TCCACTACCG ACACTCGCGG TGTTATCACT
TACGTTAATG CCCGTTTTGC CGAAGTCTCA GGCTATAGCG CCCAAGAGTT AATTGGCAGT
GCCCACAATA TGGTTCGTCA TCCCGATATG CCGAGCGCCG CCTTTAAAGA AATGTGGGAA
AAGCTTAAGT CGGGCCAATC TTGGCGCGGC ATAGTGAAAA ACCGCTGTAA AAATGGTGGC
TTCTATTGGG TCGATGCCTT TGTCTCGCCA TTGTTTGAAA ACGGCACCAT TGTCGGTTAT
CAATCGGTAC GTATTCAGCC TCAGGCCGCC TACGTCAGCA AAGCAAATGA GATATACCAA
AGACTTAAAC TGGATAAATC CATTTCTAAG CCCTTAAGCT TAATGCAGAA ACGTATCCTC
TCGGCGGTTG TCGCCTCAAC AGGCCTGCTG ATCGCAGGCT ACTTTTGGGG CTGGGGCGTG
ATTATCGCGG GGGCGGTTCT GATGAGTTTA AACTTGGCTA TATTCTACGA TGAGGCCTTT
CGCATTCCCG CTAAACTGAT TGAAATGCAA ACCAAATACG ACTCTATCAG TCGTTACATC
TACTCGGGTG CCGATACGTC TTCTATCCTC GACTTCCAGC TCATCATGCT GCAGGCCAAA
ATGAATGGCG TACTGGGACG CACACAAGAT CAAGCCAATC AATTGCACGC AATTGCCGAT
CAATTGGTGG TCGCGACCGA GCAAACCTAT GTCAGCCTAG ATCAAGAGAA AAGTCAGTTA
GAACAGCTCT CTGGCGCGAT GGAAGAAATG AGTTCAACCA TTACAGAAGT GGCGCAGAAT
ACCCATCTCA CGTCCACCAG CATCAATACC GCCTACGATC TATGCCTTAA AAGCAGCGCC
AATATGAAGG CCAATACTCA AAAAGTGGAA CAACTGGCCA AGTCTGTTGC CGATGCAGCT
AACAATGCCC ACCAATTAAA TAAAGAAGCC GAGCAAGTTG CTAATGCGAT GGGCGAAATT
GACTCCATCG CCGAGCAAAC CAACCTTCTC GCCCTCAATG CGGCCATTGA AGCTGCCCGT
GCGGGTGAAC AAGGCCGTGG GTTTGCCGTG GTCGCCGATG AAGTGCGCGC GCTGTCGAGC
CGAACCCAAC TGTCGACCAA CTGTATTTCA AAGAGTGTCG ATAAGATGTT CACTATGCTC
AACGCATGGG CCAAAGAAAT GGAACAAAGC CGCCAACACG CGGAGCGCTG CGCTAGCGAC
ATCCAACTGT CCGCCGACAA TGTGAATACC ATTTACCAAG AAGTGAGTGA TATCCACACC
TTTGCCCAGC AAAATGCGGT CGCAGCGGAT CAACAGCGTC AAGTGGTCAA CGAGATTGCC
AGCAACATAC ACTCCATCAC CCATTCAAGC GTAGAAAACT TAGCCGCAAC CCATCTGATT
GGTGATGCCG CCCATCTGCT TAAGCACAAT GCCGAGAAAG CCCTCGGCTT GAGACGCACC
TTCGGTTAG
|
|---|
| Protein sequence | MSQSNASANR TLNAQRSDQE IRLTPQDELI STTDTRGVIT YVNARFAEVS GYSAQELIGS
AHNMVRHPDM PSAAFKEMWE KLKSGQSWRG IVKNRCKNGG FYWVDAFVSP LFENGTIVGY
QSVRIQPQAA YVSKANEIYQ RLKLDKSISK PLSLMQKRIL SAVVASTGLL IAGYFWGWGV
IIAGAVLMSL NLAIFYDEAF RIPAKLIEMQ TKYDSISRYI YSGADTSSIL DFQLIMLQAK
MNGVLGRTQD QANQLHAIAD QLVVATEQTY VSLDQEKSQL EQLSGAMEEM SSTITEVAQN
THLTSTSINT AYDLCLKSSA NMKANTQKVE QLAKSVADAA NNAHQLNKEA EQVANAMGEI
DSIAEQTNLL ALNAAIEAAR AGEQGRGFAV VADEVRALSS RTQLSTNCIS KSVDKMFTML
NAWAKEMEQS RQHAERCASD IQLSADNVNT IYQEVSDIHT FAQQNAVAAD QQRQVVNEIA
SNIHSITHSS VENLAATHLI GDAAHLLKHN AEKALGLRRT FG
|
|---|
| |