More than 300 homologs were found in PanDaTox collection
for query gene RPC_4930 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_4930  methyl-accepting chemotaxis sensory transducer  100 
 
 
362 aa  733    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.226636 
 
 
-
 
NC_009485  BBta_3999  methyl-accepting chemotaxis sensory transducer  74.72 
 
 
362 aa  545  1e-154  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.80171  normal 
 
 
-
 
NC_007778  RPB_0006  methyl-accepting chemotaxis sensory transducer  70.96 
 
 
359 aa  494  1e-139  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.906877  normal 
 
 
-
 
NC_010511  M446_3313  methyl-accepting chemotaxis sensory transducer  59.76 
 
 
361 aa  387  1e-106  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1930  methyl-accepting chemotaxis sensory transducer  56.2 
 
 
366 aa  378  1e-104  Methylobacterium populi BJ001  Bacteria  normal  0.702252  normal  0.0243578 
 
 
-
 
NC_010505  Mrad2831_5068  methyl-accepting chemotaxis sensory transducer  60.98 
 
 
371 aa  377  1e-103  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0531667 
 
 
-
 
NC_010172  Mext_1975  chemotaxis sensory transducer  54.12 
 
 
364 aa  377  1e-103  Methylobacterium extorquens PA1  Bacteria  normal  0.129929  normal 
 
 
-
 
NC_011757  Mchl_2252  methyl-accepting chemotaxis sensory transducer  54.12 
 
 
364 aa  378  1e-103  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0082  chemotaxis sensory transducer  54.13 
 
 
359 aa  373  1e-102  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4260  methyl-accepting chemotaxis sensory transducer  55.72 
 
 
352 aa  359  5e-98  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3892  putative methyl-accepting chemotaxis protein  55.72 
 
 
352 aa  358  9e-98  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.344749 
 
 
-
 
NC_010725  Mpop_4363  methyl-accepting chemotaxis sensory transducer  57.59 
 
 
345 aa  353  2.9999999999999997e-96  Methylobacterium populi BJ001  Bacteria  normal  0.139679  normal  0.610806 
 
 
-
 
NC_007643  Rru_A0080  chemotaxis sensory transducer  53.3 
 
 
362 aa  352  5e-96  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0081  chemotaxis sensory transducer  51.72 
 
 
362 aa  348  8e-95  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3960  methyl-accepting chemotaxis sensory transducer  48.06 
 
 
367 aa  313  1.9999999999999998e-84  Caulobacter sp. K31  Bacteria  normal  0.273719  normal  0.409706 
 
 
-
 
NC_007347  Reut_A0771  methyl-accepting chemotaxis sensory transducer  48.37 
 
 
409 aa  289  5.0000000000000004e-77  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2724  methyl-accepting chemotaxis sensory transducer  47.13 
 
 
341 aa  288  1e-76  Sphingomonas wittichii RW1  Bacteria  normal  0.894036  normal 
 
 
-
 
NC_007952  Bxe_B1126  methyl-accepting chemotaxis sensory transducer  45.67 
 
 
351 aa  281  1e-74  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0931  methyl-accepting chemotaxis sensory transducer  42.68 
 
 
368 aa  239  4e-62  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.219476  normal  0.828358 
 
 
-
 
NC_011989  Avi_1377  methyl-accepting chemotaxis protein  40.68 
 
 
370 aa  235  1.0000000000000001e-60  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1080  methyl-accepting chemotaxis sensory transducer  41.08 
 
 
368 aa  229  5e-59  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_2343  methyl-accepting chemotaxis sensory transducer  34.28 
 
 
377 aa  200  3e-50  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1064  methyl-accepting chemotaxis sensory transducer with Cache sensor  28 
 
 
334 aa  131  1.0000000000000001e-29  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1709  hypothetical protein  27.97 
 
 
668 aa  88.6  2e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1760  CheW protein  27.76 
 
 
875 aa  83.6  0.000000000000005  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1071  CheW protein  28.89 
 
 
891 aa  76.3  0.0000000000008  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0470  CheW protein  31 
 
 
848 aa  67  0.0000000005  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0520  GntT protein  31.43 
 
 
306 aa  65.1  0.000000002  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2970  CheW protein  29.61 
 
 
841 aa  65.5  0.000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4927  methyl-accepting chemotaxis protein/sensory box protein  33.33 
 
 
511 aa  64.3  0.000000003  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0956  methyl-accepting chemotaxis sensory transducer  31.68 
 
 
676 aa  63.9  0.000000004  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II1022  methyl-accepting chemotaxis protein  38.24 
 
 
628 aa  63.5  0.000000005  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.771007  n/a   
 
 
-
 
NC_009783  VIBHAR_00119  methyl-accepting chemotaxis protein  39.45 
 
 
626 aa  63.2  0.000000007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_3867  methyl-accepting chemotaxis sensory transducer  33.58 
 
 
572 aa  63.2  0.000000007  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012029  Hlac_1029  methyl-accepting chemotaxis sensory transducer  33.91 
 
 
819 aa  62.8  0.000000008  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal  0.558162 
 
 
-
 
NC_007520  Tcr_2145  hypothetical protein  22.91 
 
 
692 aa  62.8  0.00000001  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0343  methyl-accepting chemotaxis sensory transducer  39.18 
 
 
1079 aa  62.4  0.00000001  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4865  methyl-accepting chemotaxis sensory transducer  45.45 
 
 
563 aa  62  0.00000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0680  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
679 aa  62  0.00000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  36.36 
 
 
628 aa  61.2  0.00000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010511  M446_3474  methyl-accepting chemotaxis sensory transducer  48.68 
 
 
697 aa  61.2  0.00000003  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.657022 
 
 
-
 
NC_002939  GSU1032  methyl-accepting chemotaxis protein  43.48 
 
 
645 aa  61.2  0.00000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  38.54 
 
 
541 aa  61.2  0.00000003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3581  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
567 aa  60.8  0.00000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0981346  normal  0.985512 
 
 
-
 
NC_008322  Shewmr7_3447  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.07 
 
 
524 aa  60.8  0.00000003  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_003912  CJE0498  methyl-accepting chemotaxis protein  33.64 
 
 
365 aa  60.5  0.00000004  Campylobacter jejuni RM1221  Bacteria  normal  0.654005  n/a   
 
 
-
 
NC_011725  BCB4264_A5186  methyl-accepting chemotaxis protein  45.45 
 
 
563 aa  60.8  0.00000004  Bacillus cereus B4264  Bacteria  unclonable  0.000109018  n/a   
 
 
-
 
NC_011772  BCG9842_B0063  methyl-accepting chemotaxis protein  45.45 
 
 
563 aa  60.8  0.00000004  Bacillus cereus G9842  Bacteria  decreased coverage  0.000000482836  normal  0.0217071 
 
 
-
 
NC_013522  Taci_0247  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
528 aa  60.5  0.00000004  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_3031  methyl-accepting chemotaxis sensory transducer  34.4 
 
 
297 aa  60.5  0.00000004  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.100642 
 
 
-
 
NC_008321  Shewmr4_0583  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.07 
 
 
524 aa  60.8  0.00000004  Shewanella sp. MR-4  Bacteria  normal  normal  0.344402 
 
 
-
 
NC_009831  Ssed_2309  methyl-accepting chemotaxis protein-like protein  60.78 
 
 
547 aa  60.5  0.00000004  Shewanella sediminis HAW-EB3  Bacteria  normal  0.037772  hitchhiker  0.0000415162 
 
 
-
 
NC_004578  PSPTO_5569  methyl-accepting chemotaxis protein  38.46 
 
 
541 aa  60.5  0.00000005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  42.68 
 
 
625 aa  60.5  0.00000005  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_009654  Mmwyl1_0922  methyl-accepting chemotaxis sensory transducer  41.76 
 
 
674 aa  60.5  0.00000005  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_3620  methyl-accepting chemotaxis sensory transducer  45.45 
 
 
563 aa  60.5  0.00000005  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0582  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  48 
 
 
524 aa  60.5  0.00000005  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0851  methyl-accepting chemotaxis sensory transducer  35.14 
 
 
765 aa  60.1  0.00000006  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0516  methyl-accepting chemotaxis sensory transducer  33.88 
 
 
664 aa  60.1  0.00000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0344435  n/a   
 
 
-
 
NC_004578  PSPTO_4541  methyl-accepting chemotaxis protein  38.46 
 
 
541 aa  60.1  0.00000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.726322  n/a   
 
 
-
 
NC_009664  Krad_4465  methyl-accepting chemotaxis sensory transducer  40.74 
 
 
532 aa  60.1  0.00000006  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.857744  normal  0.045525 
 
 
-
 
NC_009674  Bcer98_3619  methyl-accepting chemotaxis sensory transducer  45.45 
 
 
564 aa  60.1  0.00000006  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0473  methyl-accepting chemotaxis protein  33.64 
 
 
365 aa  60.1  0.00000006  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  0.614165  n/a   
 
 
-
 
NC_004578  PSPTO_2448  methyl-accepting chemotaxis protein  31.51 
 
 
646 aa  59.7  0.00000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.718596  n/a   
 
 
-
 
NC_007951  Bxe_A1404  methyl-accepting chemotaxis sensory transducer  44.44 
 
 
526 aa  59.7  0.00000007  Burkholderia xenovorans LB400  Bacteria  normal  0.837654  normal  0.87511 
 
 
-
 
NC_006348  BMA2857  methyl-accepting chemotaxis protein, putative  44.44 
 
 
673 aa  59.7  0.00000008  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0122  methyl-accepting chemotaxis protein  41.86 
 
 
553 aa  59.7  0.00000008  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3433  putative methyl-accepting chemotaxis protein  44.44 
 
 
673 aa  59.7  0.00000008  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3934  methyl-accepting chemotaxis protein  44.44 
 
 
673 aa  59.7  0.00000009  Burkholderia pseudomallei 1106a  Bacteria  normal  0.3175  n/a   
 
 
-
 
NC_007434  BURPS1710b_0074  methyl-accepting chemotaxis protein I  44.44 
 
 
673 aa  59.7  0.00000009  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3180  methyl-accepting chemotaxis protein, putative  33.12 
 
 
666 aa  59.3  0.00000009  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1214  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.77 
 
 
527 aa  59.3  0.00000009  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3118  putative methyl-accepting chemotaxis protein  44.44 
 
 
673 aa  59.7  0.00000009  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0285227  n/a   
 
 
-
 
NC_008836  BMA10229_A1686  putative methyl-accepting chemotaxis protein  44.44 
 
 
673 aa  59.7  0.00000009  Burkholderia mallei NCTC 10229  Bacteria  normal  0.303273  n/a   
 
 
-
 
NC_011773  BCAH820_0422  methyl-accepting chemotaxis protein  28.4 
 
 
579 aa  59.3  0.0000001  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013421  Pecwa_1940  methyl-accepting chemotaxis sensory transducer  36.75 
 
 
560 aa  58.9  0.0000001  Pectobacterium wasabiae WPP163  Bacteria  normal  0.364705  n/a   
 
 
-
 
NC_005945  BAS0365  methyl-accepting chemotaxis protein  28.4 
 
 
579 aa  59.3  0.0000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4905  methyl-accepting chemotaxis protein  44.16 
 
 
563 aa  58.5  0.0000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0355  methyl-accepting chemotaxis protein  28.4 
 
 
579 aa  59.3  0.0000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3853  methyl-accepting chemotaxis protein II  44.44 
 
 
671 aa  59.3  0.0000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0868  histidine kinase, HAMP region: chemotaxis sensory transducer  39.42 
 
 
546 aa  58.5  0.0000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.872643 
 
 
-
 
NC_014150  Bmur_1006  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.6 
 
 
601 aa  58.9  0.0000001  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.0000000000328264  n/a   
 
 
-
 
NC_007530  GBAA_0379  methyl-accepting chemotaxis protein  28.4 
 
 
579 aa  59.3  0.0000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5280  methyl-accepting chemotaxis protein  44.16 
 
 
563 aa  58.5  0.0000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1630  methyl-accepting chemotaxis sensory transducer  38.46 
 
 
605 aa  59.3  0.0000001  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00337409  n/a   
 
 
-
 
NC_010506  Swoo_0712  methyl-accepting chemotaxis sensory transducer with Cache sensor  41.46 
 
 
627 aa  58.9  0.0000001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0412159  hitchhiker  0.0000400753 
 
 
-
 
NC_009428  Rsph17025_1046  methyl-accepting chemotaxis sensory transducer  46.67 
 
 
551 aa  59.3  0.0000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2032  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.5 
 
 
1285 aa  59.3  0.0000001  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.295891 
 
 
-
 
NC_012917  PC1_1669  methyl-accepting chemotaxis sensory transducer  36.75 
 
 
560 aa  58.9  0.0000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1520  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.66 
 
 
543 aa  58.9  0.0000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.112151 
 
 
-
 
NC_013202  Hmuk_0280  methyl-accepting chemotaxis sensory transducer  36.54 
 
 
329 aa  59.3  0.0000001  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.240789  normal  0.07707 
 
 
-
 
NC_014150  Bmur_2106  methyl-accepting chemotaxis sensory transducer with Cache sensor  46.03 
 
 
601 aa  58.9  0.0000001  Brachyspira murdochii DSM 12563  Bacteria  normal  0.449983  n/a   
 
 
-
 
NC_008740  Maqu_2374  methyl-accepting chemotaxis sensory transducer  41.38 
 
 
406 aa  59.3  0.0000001  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0442  methyl-accepting chemotaxis protein  29.81 
 
 
580 aa  58.9  0.0000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0771  methyl-accepting chemotaxis sensory transducer  46.05 
 
 
822 aa  58.2  0.0000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5181  methyl-accepting chemotaxis protein  49.3 
 
 
563 aa  58.2  0.0000002  Bacillus cereus ATCC 10987  Bacteria  unclonable  0.0000000942928  n/a   
 
 
-
 
NC_003910  CPS_1267  methyl-accepting chemotaxis protein  34.85 
 
 
557 aa  58.2  0.0000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0043  methyl-accepting chemotaxis sensory transducer  30.41 
 
 
421 aa  58.2  0.0000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0445  putative methyl-accepting chemotaxis sensory transducer  38.38 
 
 
395 aa  58.5  0.0000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0391  methyl-accepting chemotaxis sensory transducer  51.79 
 
 
499 aa  58.5  0.0000002  Saccharophagus degradans 2-40  Bacteria  normal  0.0811848  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>