More than 300 homologs were found in PanDaTox collection
for query gene RPB_0006 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_0006  methyl-accepting chemotaxis sensory transducer  100 
 
 
359 aa  723    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.906877  normal 
 
 
-
 
NC_009485  BBta_3999  methyl-accepting chemotaxis sensory transducer  73.24 
 
 
362 aa  508  1e-143  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.80171  normal 
 
 
-
 
NC_007925  RPC_4930  methyl-accepting chemotaxis sensory transducer  70.96 
 
 
362 aa  486  1e-136  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.226636 
 
 
-
 
NC_011757  Mchl_2252  methyl-accepting chemotaxis sensory transducer  59.25 
 
 
364 aa  395  1e-109  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1975  chemotaxis sensory transducer  59.25 
 
 
364 aa  395  1e-109  Methylobacterium extorquens PA1  Bacteria  normal  0.129929  normal 
 
 
-
 
NC_010725  Mpop_1930  methyl-accepting chemotaxis sensory transducer  60.12 
 
 
366 aa  386  1e-106  Methylobacterium populi BJ001  Bacteria  normal  0.702252  normal  0.0243578 
 
 
-
 
NC_010511  M446_3313  methyl-accepting chemotaxis sensory transducer  59.21 
 
 
361 aa  382  1e-105  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4363  methyl-accepting chemotaxis sensory transducer  59.31 
 
 
345 aa  372  1e-102  Methylobacterium populi BJ001  Bacteria  normal  0.139679  normal  0.610806 
 
 
-
 
NC_010505  Mrad2831_5068  methyl-accepting chemotaxis sensory transducer  60.61 
 
 
371 aa  369  1e-101  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0531667 
 
 
-
 
NC_007643  Rru_A0082  chemotaxis sensory transducer  55.72 
 
 
359 aa  366  1e-100  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0080  chemotaxis sensory transducer  54.47 
 
 
362 aa  357  9.999999999999999e-98  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4260  methyl-accepting chemotaxis sensory transducer  57.55 
 
 
352 aa  354  1e-96  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3892  putative methyl-accepting chemotaxis protein  57.55 
 
 
352 aa  353  2.9999999999999997e-96  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.344749 
 
 
-
 
NC_007643  Rru_A0081  chemotaxis sensory transducer  53.27 
 
 
362 aa  348  1e-94  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3960  methyl-accepting chemotaxis sensory transducer  50.45 
 
 
367 aa  333  4e-90  Caulobacter sp. K31  Bacteria  normal  0.273719  normal  0.409706 
 
 
-
 
NC_007347  Reut_A0771  methyl-accepting chemotaxis sensory transducer  49.14 
 
 
409 aa  312  5.999999999999999e-84  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1126  methyl-accepting chemotaxis sensory transducer  47.93 
 
 
351 aa  307  2.0000000000000002e-82  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2724  methyl-accepting chemotaxis sensory transducer  44.74 
 
 
341 aa  271  2e-71  Sphingomonas wittichii RW1  Bacteria  normal  0.894036  normal 
 
 
-
 
NC_011989  Avi_1377  methyl-accepting chemotaxis protein  41.01 
 
 
370 aa  235  1.0000000000000001e-60  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1080  methyl-accepting chemotaxis sensory transducer  42.01 
 
 
368 aa  235  1.0000000000000001e-60  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0931  methyl-accepting chemotaxis sensory transducer  42.32 
 
 
368 aa  233  3e-60  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.219476  normal  0.828358 
 
 
-
 
NC_014148  Plim_2343  methyl-accepting chemotaxis sensory transducer  31.78 
 
 
377 aa  192  6e-48  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1064  methyl-accepting chemotaxis sensory transducer with Cache sensor  27.99 
 
 
334 aa  119  9.999999999999999e-26  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1760  CheW protein  26.97 
 
 
875 aa  92.4  1e-17  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1709  hypothetical protein  26.3 
 
 
668 aa  86.7  6e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2091  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  42.15 
 
 
559 aa  70.1  0.00000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.382764  n/a   
 
 
-
 
NC_010725  Mpop_2047  methyl-accepting chemotaxis sensory transducer  43.97 
 
 
562 aa  67.4  0.0000000003  Methylobacterium populi BJ001  Bacteria  normal  normal  0.759486 
 
 
-
 
NC_007298  Daro_1071  CheW protein  29.67 
 
 
891 aa  67  0.0000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0223  methyl-accepting chemotaxis sensory transducer  43.75 
 
 
565 aa  65.9  0.0000000009  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_2145  hypothetical protein  24.18 
 
 
692 aa  65.9  0.000000001  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2232  methyl-accepting chemotaxis sensory transducer  44.29 
 
 
307 aa  65.1  0.000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.383652 
 
 
-
 
NC_008345  Sfri_1808  methyl-accepting chemotaxis sensory transducer  35.51 
 
 
514 aa  64.3  0.000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2091  methyl-accepting chemotaxis sensory transducer  41.74 
 
 
562 aa  63.9  0.000000004  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0245477 
 
 
-
 
NC_009485  BBta_0905  methyl-accepting chemotaxis protein  41.51 
 
 
559 aa  63.9  0.000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.244898  normal 
 
 
-
 
NC_007908  Rfer_0470  CheW protein  28.57 
 
 
848 aa  63.5  0.000000005  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6268  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.35 
 
 
559 aa  63.5  0.000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0690634  normal 
 
 
-
 
NC_010172  Mext_0191  chemotaxis sensory transducer  41.74 
 
 
565 aa  63.2  0.000000006  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.731843 
 
 
-
 
NC_011757  Mchl_0134  methyl-accepting chemotaxis sensory transducer  41.74 
 
 
565 aa  63.2  0.000000006  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.150747 
 
 
-
 
NC_014150  Bmur_0246  methyl-accepting chemotaxis sensory transducer  38.54 
 
 
644 aa  63.2  0.000000007  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1897  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.82 
 
 
1170 aa  63.2  0.000000007  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1269  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.96 
 
 
700 aa  62.8  0.000000008  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.484624  normal  0.151355 
 
 
-
 
NC_003910  CPS_4964  methyl-accepting chemotaxis protein  44.32 
 
 
545 aa  63.2  0.000000008  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1547  methyl-accepting chemotaxis protein  37.1 
 
 
635 aa  62.8  0.000000008  Agrobacterium vitis S4  Bacteria  normal  0.0672502  n/a   
 
 
-
 
NC_009438  Sputcn32_0513  methyl-accepting chemotaxis sensory transducer  36.89 
 
 
542 aa  62.8  0.000000009  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1669  methyl-accepting chemotaxis sensory transducer  40.19 
 
 
560 aa  62.4  0.00000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3579  chemotaxis sensory transducer  33.77 
 
 
554 aa  62.4  0.00000001  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013922  Nmag_2884  methyl-accepting chemotaxis sensory transducer  35.19 
 
 
553 aa  62  0.00000001  Natrialba magadii ATCC 43099  Archaea  normal  0.244033  n/a   
 
 
-
 
NC_014150  Bmur_0053  methyl-accepting chemotaxis sensory transducer  38.54 
 
 
645 aa  62.8  0.00000001  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.000916885  n/a   
 
 
-
 
NC_011901  Tgr7_0445  putative methyl-accepting chemotaxis sensory transducer  44.29 
 
 
395 aa  62.4  0.00000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_24360  chemotaxis sensory transducer  42.53 
 
 
544 aa  62.4  0.00000001  Azotobacter vinelandii DJ  Bacteria  normal  0.249262  n/a   
 
 
-
 
NC_013421  Pecwa_1940  methyl-accepting chemotaxis sensory transducer  40.19 
 
 
560 aa  62.4  0.00000001  Pectobacterium wasabiae WPP163  Bacteria  normal  0.364705  n/a   
 
 
-
 
NC_008340  Mlg_1152  methyl-accepting chemotaxis sensory transducer  43.59 
 
 
484 aa  62.4  0.00000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.26629  normal 
 
 
-
 
NC_008345  Sfri_1214  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.9 
 
 
527 aa  62.4  0.00000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2162  putative methyl-accepting chemotaxis sensory transducer  31.33 
 
 
665 aa  62.8  0.00000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1024  methyl-accepting chemotaxis sensory transducer  38.32 
 
 
562 aa  62  0.00000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5166  methyl-accepting chemotaxis sensory transducer  33.11 
 
 
669 aa  61.6  0.00000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0141  chemotaxis sensory transducer  38.6 
 
 
565 aa  62  0.00000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3907  methyl-accepting chemotaxis sensory transducer  34.5 
 
 
565 aa  61.6  0.00000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1872  methyl-accepting chemotaxis sensory transducer  41.12 
 
 
721 aa  61.2  0.00000002  Pseudomonas putida F1  Bacteria  normal  normal  0.163736 
 
 
-
 
NC_010505  Mrad2831_3674  methyl-accepting chemotaxis sensory transducer  38.68 
 
 
700 aa  61.2  0.00000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.130272  normal 
 
 
-
 
NC_009654  Mmwyl1_2719  methyl-accepting chemotaxis sensory transducer  35.25 
 
 
655 aa  61.2  0.00000002  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6902  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.8 
 
 
491 aa  61.2  0.00000002  Methylobacterium sp. 4-46  Bacteria  normal  0.694582  normal 
 
 
-
 
NC_007778  RPB_3492  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  43 
 
 
559 aa  61.6  0.00000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.948629  normal 
 
 
-
 
NC_011313  VSAL_II0170  methyl-accepting chemotaxis protein  41.25 
 
 
543 aa  61.6  0.00000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2308  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.7 
 
 
571 aa  61.2  0.00000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.643806  normal 
 
 
-
 
NC_010172  Mext_3616  chemotaxis sensory transducer  34.3 
 
 
305 aa  61.6  0.00000002  Methylobacterium extorquens PA1  Bacteria  normal  0.460138  normal 
 
 
-
 
NC_013522  Taci_0247  methyl-accepting chemotaxis sensory transducer  39.18 
 
 
528 aa  62  0.00000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_5373  methyl-accepting chemotaxis sensory transducer  38.6 
 
 
565 aa  62  0.00000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.620524  normal  0.472724 
 
 
-
 
NC_008700  Sama_0643  putative methyl-accepting chemotaxis sensory transducer  34.86 
 
 
478 aa  61.6  0.00000002  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000131612  normal 
 
 
-
 
NC_011898  Ccel_2888  methyl-accepting chemotaxis sensory transducer  28.93 
 
 
494 aa  61.6  0.00000002  Clostridium cellulolyticum H10  Bacteria  normal  0.0112427  n/a   
 
 
-
 
NC_009456  VC0395_0122  methyl-accepting chemotaxis protein  41.77 
 
 
553 aa  62  0.00000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0185  methyl-accepting chemotaxis protein  40.91 
 
 
770 aa  62  0.00000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3950  methyl-accepting chemotaxis transducer  41.12 
 
 
725 aa  61.2  0.00000003  Pseudomonas putida KT2440  Bacteria  normal  normal  0.691578 
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  48.68 
 
 
640 aa  61.2  0.00000003  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_014150  Bmur_1805  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.58 
 
 
655 aa  61.2  0.00000003  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.00000396464  n/a   
 
 
-
 
NC_014150  Bmur_2106  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.27 
 
 
601 aa  61.2  0.00000003  Brachyspira murdochii DSM 12563  Bacteria  normal  0.449983  n/a   
 
 
-
 
NC_003910  CPS_2733  methyl-accepting chemotaxis protein  33.33 
 
 
485 aa  60.8  0.00000004  Colwellia psychrerythraea 34H  Bacteria  normal  0.501844  n/a   
 
 
-
 
NC_009901  Spea_4019  methyl-accepting chemotaxis sensory transducer  48.19 
 
 
646 aa  60.8  0.00000004  Shewanella pealeana ATCC 700345  Bacteria  normal  0.723587  n/a   
 
 
-
 
NC_010001  Cphy_1639  methyl-accepting chemotaxis sensory transducer  45.83 
 
 
566 aa  60.5  0.00000004  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00481169  n/a   
 
 
-
 
NC_009784  VIBHAR_05691  histidine kinase  40.78 
 
 
538 aa  60.5  0.00000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013522  Taci_0209  methyl-accepting chemotaxis sensory transducer  37.86 
 
 
574 aa  60.5  0.00000004  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.0000416646  n/a   
 
 
-
 
NC_014150  Bmur_0902  methyl-accepting chemotaxis sensory transducer  39.05 
 
 
614 aa  60.5  0.00000004  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3891  hypothetical protein  46.48 
 
 
551 aa  60.5  0.00000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.452082 
 
 
-
 
NC_014150  Bmur_1380  methyl-accepting chemotaxis sensory transducer  43.37 
 
 
715 aa  60.5  0.00000004  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0581  methyl-accepting chemotaxis sensory transducer  37.7 
 
 
562 aa  60.5  0.00000005  Methylobacterium populi BJ001  Bacteria  normal  0.0281709  decreased coverage  0.00474558 
 
 
-
 
NC_013456  VEA_002906  methyl-accepting chemotaxis protein  41.56 
 
 
678 aa  60.5  0.00000005  Vibrio sp. Ex25  Bacteria  normal  0.816112  n/a   
 
 
-
 
NC_014150  Bmur_0346  methyl-accepting chemotaxis sensory transducer with Cache sensor  54.55 
 
 
606 aa  60.1  0.00000005  Brachyspira murdochii DSM 12563  Bacteria  decreased coverage  0.0000541258  n/a   
 
 
-
 
NC_008345  Sfri_0216  methyl-accepting chemotaxis sensory transducer  34.96 
 
 
648 aa  60.1  0.00000005  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  44.87 
 
 
661 aa  60.5  0.00000005  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1849  methyl-accepting chemotaxis sensory transducer  41.11 
 
 
570 aa  60.1  0.00000006  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07022  histidine kinase  39.42 
 
 
553 aa  60.1  0.00000006  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_7506  putative methyl-accepting chemotaxis protein  47.3 
 
 
671 aa  60.1  0.00000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_4454  methyl-accepting chemotaxis sensory transducer  41.46 
 
 
653 aa  60.1  0.00000006  Pectobacterium wasabiae WPP163  Bacteria  normal  0.625525  n/a   
 
 
-
 
NC_014150  Bmur_1006  methyl-accepting chemotaxis sensory transducer with Cache sensor  47.37 
 
 
601 aa  60.1  0.00000006  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.0000000000328264  n/a   
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  43.84 
 
 
625 aa  60.1  0.00000006  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_007519  Dde_1627  methyl-accepting chemotaxis sensory transducer  38.54 
 
 
733 aa  59.7  0.00000007  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.426202  n/a   
 
 
-
 
NC_010506  Swoo_4273  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.32 
 
 
499 aa  59.7  0.00000007  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2112  methyl-accepting chemotaxis sensory transducer  43.66 
 
 
571 aa  59.7  0.00000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0529  methyl-accepting chemotaxis sensory transducer  46.58 
 
 
573 aa  59.7  0.00000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0116952  n/a   
 
 
-
 
NC_009012  Cthe_3156  methyl-accepting chemotaxis sensory transducer  44.44 
 
 
416 aa  59.7  0.00000007  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.0000160053  n/a   
 
 
-
 
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