| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0583 |
|---|
| Symbol | |
|---|
| ID | 4251706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 672707 |
|---|
| End bp | 674281 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638117142 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
|---|
| Protein accession | YP_732720 |
|---|
| Protein GI | 113968927 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.344402 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAA ATTTACCAAT AACACAGCGG GAATACGACT ATCCAGCGGA TTGGATTTTA
CTGTCGACGA CGGACACTAA GAGTCATATC ACTTACGCCA ATCCATCATT TTGTACCGTT
GCGGGATACG AGCTTAGCGC CATGTTGGGG CAACCCCATA ATATGGTGCG TCATCCCGAT
ATGCCCCCCG AAGCATTTGA AGATCTGTGG AAAACCATCC GAAAAGGCGA GCCTTGGAAA
GGCATAGTCA AAAATCGCTG TGCCAATGGC GACCATTATT GGGTCGACGC CTATGTGTCG
CCGATTATGG TCAATGGTCA GGTGGCCGAA TTTCAATCGG TACGCACTAA ACCCAGCCGC
GACCAGATAA ACCGAGCAGA AGCCGTCTAT GCCGAATTAA ATAAGAGTGG TCAAGTTAAG
GCATTAAAAC GCACCTTAGA AATGCCGACT CAGTTGATGC TACTCGCCTT AGTTGCTCTG
TTGCCCATGC TGTATTTGGC GCTGCAGATT GGAGCGGTGG GATTTGTCGC GCTTGCCATT
AGTGCTCTGG CACTTTTTAT TGGTGGCAAT ATGATTTTAG GGCGTTATCG GGCGCTGGTC
GCTAAGGCGA AGAAAATCTA CAACAACCCT TTGATGGCAC ATATCTATAC CGGAAAATCC
GATGATCTAG GCGCGATCGA TCTGGCGCTG CAAATGCAAA CCTCAGAGTT AAAATCCATG
TTAGGTCGCG CCCGCGATTC CTGCGATAAG GTGAGTAAGC AAGCCAAAGT TTCGGCGGCG
AAAGGCGAAG AGATTCAAGG GACAAGCCAG TCACAGCTGG CCGAGATTGA ACAAGTCGCG
ACGGCCATGC AACAGATGAC GGCGACACTT GGGGATATGT CTTCTAACTG TGCCGATGCG
GCGAGCGCTT CACAGATGGC GTCGCAGCAG ACAATCAATG GCGATAAAAC TGTTGTCAGT
ACCATTCAAT CGATTCAGGC CATGGCGCAG CAGTTGCAAG AAACCTCGCA GGTGATCACT
GAGTTAGAAG GGCATAGCAG GGATATAGGC ACAGTGCTGG ATGTGATCCA GGGGATTGCC
GAACAGACAA ATTTATTGGC ACTAAACGCC GCGATTGAAG CGGCGCGAGC GGGTGAGCAA
GGGCGTGGTT TTGCCGTAGT TGCCGATGAG GTGCGGGCAT TAGCGCAGCG AACCCATGAT
GCCACCAAGG AAATCCACAC AATGATCAAC CTGTTGCAGC AGGGCACCCA CAAGGCGGTG
CGCAGCATGC AAGAAGGAGT CGATGCCGCC GCTGAATGTA TTACCACTGC GGATCTTGCG
GGCACGGCGC TGCGTACCAT ACGTGAAGCT ATCACTACCA TTACGGATAT GACCCACCAT
ATTGCCAGTG CGGTAGAGGA GCAATCGAGC GTGGCGAACG AGATGAATCG CAGCGTGGTC
AATGTGTCGC AATTTACCCA TTCCAGCCAT CAACTCGGCT GTGAAATGGT CAGCATCAAT
GATGAGGTGA TAGGCGAAAT GGACTCCCAT ACAGTGCTGG TCGGGCAGTT TTTAAAGCGC
AGCTTTAAGG TATAG
|
|---|
| Protein sequence | MRKNLPITQR EYDYPADWIL LSTTDTKSHI TYANPSFCTV AGYELSAMLG QPHNMVRHPD
MPPEAFEDLW KTIRKGEPWK GIVKNRCANG DHYWVDAYVS PIMVNGQVAE FQSVRTKPSR
DQINRAEAVY AELNKSGQVK ALKRTLEMPT QLMLLALVAL LPMLYLALQI GAVGFVALAI
SALALFIGGN MILGRYRALV AKAKKIYNNP LMAHIYTGKS DDLGAIDLAL QMQTSELKSM
LGRARDSCDK VSKQAKVSAA KGEEIQGTSQ SQLAEIEQVA TAMQQMTATL GDMSSNCADA
ASASQMASQQ TINGDKTVVS TIQSIQAMAQ QLQETSQVIT ELEGHSRDIG TVLDVIQGIA
EQTNLLALNA AIEAARAGEQ GRGFAVVADE VRALAQRTHD ATKEIHTMIN LLQQGTHKAV
RSMQEGVDAA AECITTADLA GTALRTIREA ITTITDMTHH IASAVEEQSS VANEMNRSVV
NVSQFTHSSH QLGCEMVSIN DEVIGEMDSH TVLVGQFLKR SFKV
|
|---|
| |