Gene Rpal_0435 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0435 
Symbol 
ID6408083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp466755 
End bp468437 
Gene Length1683 bp 
Protein Length560 aa 
Translation table11 
GC content63% 
IMG OID642710347 
Productmethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 
Protein accessionYP_001989471 
Protein GI192288866 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.617966 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCTCCT TCACCCGCTC TGCCGGCCAT GATCATGCGG CAGCGATGCT CGCGGCGCTC 
AATCGCTCCC AGGCGGTGAT CGAGTTTGAT CTGGACGGCA ACGTCATCGA CGCAAACGAC
AACTTTCTGA CCGCGCTCGG CTACTCGCTT CCAGAGATCA AGGGCAAGCA TCACCGGATG
TTCGTCGATC CGAGCGAGCA CGACAGCACA GCCTATCGCG AGTTCTGGAC CGCGTTGCGC
ACCGGCCAGT ATCAAGCCGG CGAATTCCAC CGCATCGGCA AGGGCGGCCG CGAGGTCTGG
ATCCAGGCGT CCTACAACCC GATCCTCGAC AAGAACGGCA AACCGACCGG CGTCGTGAAG
TTCGCGGCCG ACATCACCGC GGCCAAGACC CAATCGCTGG AGGATGCCGG CAAGCTCGCG
GCAATCGGCC GCGCTCAGGC GGTGATCGAG TTTGCGATGG ACGGCACCGT CCTCACCGCC
AACGATAACT TTCTCGCCGC GATGGAGTAC TCGCTTGGCG AGATCAAGGG CAAGCATCAC
AGCATGTTTG TCGAGCCGTC GGTGCGCGAG AGCAGCGACT ACCGCGAATT TTGGGCGCGG
CTCAACCGCG GCGAATACTT CCCCGGCGAG TTCAAGCGGA TCGGCAAGGG CGGCAAGGAG
GTCTGGATTC TGGCGTCCTA CAACCCGATC CTCGACGCAC GCGGCAAGCC GTTCAAAGTG
GTGAAATACG CCACCGACGT CACCGCTCAG AAGCTGAAGA ACGCCGACTT CTCCGGCCAG
ATCGATGCGA TCCGCAAGTC ACAGGCGGTG ATCGAATTCA GCATCGACGG CACGGTGCTG
GACGCCAACG ACAACTTCCT GCACGCGCTG GGCTACTCGC TGGGCGAGAT CAAGGGCCGG
CATCACAGTA TTTTCATCGA CCCCGCCGAG CGCGAGAGCG CGGCCTATCG GGCATTCTGG
GCGGCGCTCG GTCGCGGCGA TTATCAGGCC GGCGAATACA AGCGCATCGG CAAAGGCGGC
AGGGAAGTCT GGATCCAGGC CTCCTACAAC CCGATCCTCG ACCTCAATGG GCGGCCTTTC
AAGGTGGTGA AATACGCCGC CGACACCACC CGCCAGGTAC TCACCCGGCT CGGCAACGAG
CGCGTCCGCG CCATGATGGA ATCGGTCGCG GCCGGAGCGG AGGAGCTGAA CGCTTCGGTA
CGCGAGATCT CCGAAGCGAT GACCAAGTCG AGGCAGACAG CGATGAACGC CGTCGGCGAA
GTCGATGCAG CCGACTCTCA GGCCAATCAG CTCAACGACG CGGCTCAAGC AATGAGCGGC
ATCGTCGAAC TGATCAACCA CATCACCGGG CAGATCAATC TGCTGGCGCT CAACGCCACG
ATCGAGTCGG CGCGCGCCGG CGAGGCCGGG CGCGGCTTTG CTGTGGTGGC GGCGGAGGTG
AAGAACCTCG CCAATCAGGC CAAGCAGGCC ACCGACAAGA TCGGGACCGA GATCAGCAAT
CTCACCAGCG TCTCCGGCGA CGTGGTCGGC GCGCTCGGCA AGATCAAGAG CGCGATCCAG
AACGTCAGCG AGTACGTCAG CTCGACGGCT GCGGCGGTGG AGGAGCAGAG CACGGTGACC
AGCGAGATGT CGTCGAGCAT GCAGCGCGCC GCCGCAGAAG CGGCCGCGAT CGCAGCCGGC
TAA
 
Protein sequence
MFSFTRSAGH DHAAAMLAAL NRSQAVIEFD LDGNVIDAND NFLTALGYSL PEIKGKHHRM 
FVDPSEHDST AYREFWTALR TGQYQAGEFH RIGKGGREVW IQASYNPILD KNGKPTGVVK
FAADITAAKT QSLEDAGKLA AIGRAQAVIE FAMDGTVLTA NDNFLAAMEY SLGEIKGKHH
SMFVEPSVRE SSDYREFWAR LNRGEYFPGE FKRIGKGGKE VWILASYNPI LDARGKPFKV
VKYATDVTAQ KLKNADFSGQ IDAIRKSQAV IEFSIDGTVL DANDNFLHAL GYSLGEIKGR
HHSIFIDPAE RESAAYRAFW AALGRGDYQA GEYKRIGKGG REVWIQASYN PILDLNGRPF
KVVKYAADTT RQVLTRLGNE RVRAMMESVA AGAEELNASV REISEAMTKS RQTAMNAVGE
VDAADSQANQ LNDAAQAMSG IVELINHITG QINLLALNAT IESARAGEAG RGFAVVAAEV
KNLANQAKQA TDKIGTEISN LTSVSGDVVG ALGKIKSAIQ NVSEYVSSTA AAVEEQSTVT
SEMSSSMQRA AAEAAAIAAG