More than 300 homologs were found in PanDaTox collection
for query gene Franean1_4684 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  100 
 
 
223 aa  437  9.999999999999999e-123  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  66.67 
 
 
232 aa  286  1e-76  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  64.65 
 
 
226 aa  275  4e-73  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  64.06 
 
 
223 aa  272  3e-72  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  63.72 
 
 
222 aa  266  2.9999999999999995e-70  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  62.16 
 
 
236 aa  264  8e-70  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3390  two component LuxR family transcriptional regulator  63.18 
 
 
226 aa  261  4.999999999999999e-69  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  63.18 
 
 
224 aa  260  1e-68  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  64.35 
 
 
221 aa  260  1e-68  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  60.36 
 
 
230 aa  258  6e-68  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  62.5 
 
 
222 aa  257  1e-67  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  63.72 
 
 
226 aa  257  1e-67  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  61.57 
 
 
215 aa  257  1e-67  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  59.72 
 
 
224 aa  255  4e-67  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_009921  Franean1_3727  two component LuxR family transcriptional regulator  61.82 
 
 
226 aa  254  7e-67  Frankia sp. EAN1pec  Bacteria  normal  normal  0.554715 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  57.87 
 
 
222 aa  248  4e-65  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  59.81 
 
 
225 aa  248  4e-65  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  60.65 
 
 
221 aa  245  4.9999999999999997e-64  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_013947  Snas_3287  two component transcriptional regulator, LuxR family  55.56 
 
 
233 aa  239  2.9999999999999997e-62  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0842926  normal  0.330639 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  55.3 
 
 
225 aa  236  1e-61  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  56.88 
 
 
221 aa  236  2e-61  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  59.09 
 
 
217 aa  236  2e-61  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  58.99 
 
 
219 aa  236  3e-61  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  56.5 
 
 
226 aa  235  3e-61  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  57.02 
 
 
244 aa  235  4e-61  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  56.94 
 
 
218 aa  235  4e-61  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  62.1 
 
 
224 aa  234  8e-61  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  58.8 
 
 
220 aa  233  1.0000000000000001e-60  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  54.42 
 
 
217 aa  232  3e-60  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  57.41 
 
 
247 aa  232  4.0000000000000004e-60  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  56.48 
 
 
221 aa  231  6e-60  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013947  Snas_0645  two component transcriptional regulator, LuxR family  56.02 
 
 
220 aa  228  4e-59  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.691779  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  57.73 
 
 
226 aa  226  3e-58  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  55.35 
 
 
222 aa  223  2e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  54.17 
 
 
214 aa  222  3e-57  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  54.79 
 
 
224 aa  220  9.999999999999999e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_009921  Franean1_6511  two component LuxR family transcriptional regulator  54.38 
 
 
215 aa  219  1.9999999999999999e-56  Frankia sp. EAN1pec  Bacteria  normal  normal  0.100644 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  55.5 
 
 
227 aa  219  1.9999999999999999e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  55.05 
 
 
224 aa  218  8.999999999999998e-56  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  55.45 
 
 
228 aa  217  1e-55  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013093  Amir_4260  two component transcriptional regulator, LuxR family  54.95 
 
 
217 aa  216  2e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  52.02 
 
 
228 aa  216  2e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  55 
 
 
224 aa  216  2e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  51.1 
 
 
226 aa  216  2.9999999999999998e-55  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_007777  Francci3_0303  two component LuxR family transcriptional regulator  56.02 
 
 
214 aa  216  2.9999999999999998e-55  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  51.38 
 
 
261 aa  216  2.9999999999999998e-55  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  53.85 
 
 
229 aa  215  4e-55  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  54.84 
 
 
215 aa  214  9.999999999999999e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  51.16 
 
 
221 aa  213  1.9999999999999998e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  54.09 
 
 
220 aa  213  1.9999999999999998e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  52.63 
 
 
234 aa  213  1.9999999999999998e-54  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  50.88 
 
 
223 aa  213  1.9999999999999998e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  51.58 
 
 
224 aa  212  2.9999999999999995e-54  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  51.6 
 
 
223 aa  210  1e-53  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  53.36 
 
 
220 aa  208  5e-53  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  53.24 
 
 
220 aa  207  8e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  49.16 
 
 
250 aa  207  1e-52  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  50.93 
 
 
218 aa  207  1e-52  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  51.83 
 
 
214 aa  206  2e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  52 
 
 
241 aa  206  2e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  53.46 
 
 
218 aa  206  3e-52  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  52.97 
 
 
219 aa  204  7e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  53.7 
 
 
218 aa  204  9e-52  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  53 
 
 
219 aa  204  1e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  50.23 
 
 
218 aa  202  3e-51  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.254077 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  52.49 
 
 
227 aa  202  3e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  52.78 
 
 
220 aa  202  3e-51  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_013521  Sked_37860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.21 
 
 
221 aa  202  4e-51  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  53.24 
 
 
219 aa  202  4e-51  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  53.15 
 
 
302 aa  202  4e-51  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  51.14 
 
 
221 aa  202  5e-51  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  53.24 
 
 
230 aa  201  6e-51  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  50 
 
 
225 aa  201  7e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  50 
 
 
225 aa  200  9.999999999999999e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  51.39 
 
 
230 aa  200  9.999999999999999e-51  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  49.55 
 
 
234 aa  200  9.999999999999999e-51  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013131  Caci_6705  two component transcriptional regulator, LuxR family  45.16 
 
 
258 aa  200  9.999999999999999e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.318103  normal  0.0731204 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  50.68 
 
 
239 aa  201  9.999999999999999e-51  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  49.79 
 
 
231 aa  200  9.999999999999999e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  48.66 
 
 
234 aa  200  9.999999999999999e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  46.06 
 
 
248 aa  199  1.9999999999999998e-50  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  51.61 
 
 
232 aa  199  1.9999999999999998e-50  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  49.55 
 
 
225 aa  199  3e-50  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_013947  Snas_1509  two component transcriptional regulator, LuxR family  49.77 
 
 
221 aa  199  3e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.198395  normal  0.0597777 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  52.27 
 
 
223 aa  199  3.9999999999999996e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  52.13 
 
 
211 aa  198  5e-50  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  51.82 
 
 
230 aa  198  5e-50  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  50 
 
 
215 aa  198  6e-50  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  54.02 
 
 
221 aa  198  6e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  50.92 
 
 
224 aa  198  6e-50  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  49.77 
 
 
228 aa  197  7e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  48.86 
 
 
225 aa  197  7.999999999999999e-50  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  48.23 
 
 
234 aa  197  7.999999999999999e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  48.86 
 
 
225 aa  197  9e-50  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  49.33 
 
 
225 aa  197  9e-50  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_009921  Franean1_6351  two component LuxR family transcriptional regulator  47.71 
 
 
244 aa  197  9e-50  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_19740  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.3 
 
 
216 aa  197  1.0000000000000001e-49  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.682926  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  50.46 
 
 
225 aa  196  2.0000000000000003e-49  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  51.36 
 
 
222 aa  196  2.0000000000000003e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  51.15 
 
 
217 aa  197  2.0000000000000003e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
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