More than 300 homologs were found in PanDaTox collection
for query gene Avi_5607 on replicon NC_011988
Organism: Agrobacterium vitis S4



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011988  Avi_5607  cAMP-dependent protein kinase regulatory subunit  100 
 
 
154 aa  309  7.999999999999999e-84  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5981  cyclic nucleotide-binding protein  80 
 
 
155 aa  250  6e-66  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_7131  putative transcriptional regulator, Crp/Fnr family  78.67 
 
 
155 aa  247  5e-65  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.331754 
 
 
-
 
NC_009620  Smed_4601  cyclic nucleotide-binding protein  66.89 
 
 
154 aa  209  7.999999999999999e-54  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.930738 
 
 
-
 
NC_011989  Avi_3942  cAMP-dependent protein kinase regulatory subunit  50 
 
 
154 aa  155  3e-37  Agrobacterium vitis S4  Bacteria  normal  0.644852  n/a   
 
 
-
 
NC_010505  Mrad2831_5013  cyclic nucleotide-binding protein  46.26 
 
 
147 aa  136  8.999999999999999e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.32822  normal  0.191008 
 
 
-
 
NC_011894  Mnod_4405  cyclic nucleotide-binding protein  44.22 
 
 
148 aa  132  1.9999999999999998e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2719  cyclic nucleotide-binding protein  44.9 
 
 
151 aa  130  7.999999999999999e-30  Methylobacterium sp. 4-46  Bacteria  normal  0.460468  normal  0.384505 
 
 
-
 
NC_010725  Mpop_3019  cyclic nucleotide-binding protein  42.66 
 
 
149 aa  122  2e-27  Methylobacterium populi BJ001  Bacteria  normal  0.852704  normal 
 
 
-
 
NC_011757  Mchl_3122  cyclic nucleotide-binding protein  41.26 
 
 
149 aa  115  1.9999999999999998e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.196103 
 
 
-
 
NC_010172  Mext_2896  cyclic nucleotide-binding  41.26 
 
 
194 aa  114  3e-25  Methylobacterium extorquens PA1  Bacteria  normal  0.633977  normal 
 
 
-
 
NC_009720  Xaut_1892  cyclic nucleotide-binding protein  40.14 
 
 
147 aa  111  3e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  0.326195  normal 
 
 
-
 
NC_008554  Sfum_3249  cyclic nucleotide-binding protein  35.71 
 
 
171 aa  95.5  2e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR2005  cyclic nucleotide-binding protein  32.8 
 
 
153 aa  94.4  5e-19  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1928  cyclic nucleotide-binding protein  32.8 
 
 
153 aa  94.4  5e-19  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0964  cyclic nucleotide-binding protein  33.6 
 
 
152 aa  92  3e-18  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1291  cyclic nucleotide-binding protein  31.76 
 
 
164 aa  85.9  2e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.234039  normal 
 
 
-
 
NC_011369  Rleg2_3764  cyclic nucleotide-binding protein  31.72 
 
 
151 aa  81.3  0.000000000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4089  putative transcriptional regulator, Crp/Fnr family  30.34 
 
 
151 aa  79.7  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.998394  normal 
 
 
-
 
NC_009636  Smed_3055  cyclic nucleotide-binding protein  33.33 
 
 
151 aa  76.3  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.517471  normal 
 
 
-
 
NC_008554  Sfum_4030  cyclic nucleotide-binding protein  23.29 
 
 
173 aa  75.5  0.0000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.900362 
 
 
-
 
NC_009720  Xaut_1772  cyclic nucleotide-binding protein  29.93 
 
 
161 aa  74.7  0.0000000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0691544 
 
 
-
 
NC_011831  Cagg_2419  cyclic nucleotide-binding protein  29.41 
 
 
563 aa  73.2  0.000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.871595  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  28.99 
 
 
243 aa  72.4  0.000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_007406  Nwi_0086  cyclic nucleotide-binding protein  30.28 
 
 
160 aa  72  0.000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.929528  normal  0.0740226 
 
 
-
 
NC_011757  Mchl_1854  cyclic nucleotide-binding protein  31.54 
 
 
155 aa  72  0.000000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.795804 
 
 
-
 
NC_007519  Dde_0723  cyclic nucleotide-binding domain-containing protein  30.71 
 
 
173 aa  72  0.000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1575  cyclic nucleotide-binding  32.21 
 
 
155 aa  72  0.000000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.6817  normal  0.0500798 
 
 
-
 
NC_010725  Mpop_1664  cyclic nucleotide-binding protein  29.33 
 
 
159 aa  71.6  0.000000000003  Methylobacterium populi BJ001  Bacteria  normal  normal  0.617914 
 
 
-
 
NC_009972  Haur_4167  cyclic nucleotide-binding protein  28.68 
 
 
570 aa  71.2  0.000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  31.65 
 
 
225 aa  70.5  0.000000000007  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  31.65 
 
 
225 aa  70.5  0.000000000008  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0841  cyclic nucleotide-binding protein  26.72 
 
 
160 aa  69.3  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.108052 
 
 
-
 
NC_009656  PSPA7_5420  hypothetical protein  35.71 
 
 
265 aa  68.9  0.00000000002  Pseudomonas aeruginosa PA7  Bacteria  hitchhiker  0.00117771  n/a   
 
 
-
 
NC_007925  RPC_0279  cyclic nucleotide-binding domain-containing protein  29.05 
 
 
149 aa  69.7  0.00000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.294504 
 
 
-
 
NC_008254  Meso_3425  cyclic nucleotide-binding protein  27.61 
 
 
151 aa  68.9  0.00000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_62260  hypothetical protein  34.55 
 
 
265 aa  69.3  0.00000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000000000000560596  normal  0.205453 
 
 
-
 
NC_009720  Xaut_2796  cyclic nucleotide-binding protein  29.13 
 
 
453 aa  68.9  0.00000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.180681  normal  0.733886 
 
 
-
 
NC_011989  Avi_4229  hypothetical protein  30.4 
 
 
151 aa  68.6  0.00000000003  Agrobacterium vitis S4  Bacteria  unclonable  0.000114025  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  30.37 
 
 
219 aa  68.2  0.00000000003  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  30.66 
 
 
225 aa  68.2  0.00000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0331  cyclic nucleotide-binding protein  30.33 
 
 
150 aa  67.4  0.00000000006  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0211845 
 
 
-
 
NC_007964  Nham_0093  cyclic nucleotide-binding domain-containing protein  30.28 
 
 
149 aa  67.4  0.00000000007  Nitrobacter hamburgensis X14  Bacteria  normal  0.132878  n/a   
 
 
-
 
NC_008009  Acid345_4730  cyclic nucleotide-binding protein  28.12 
 
 
286 aa  67  0.00000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.813554  normal  0.722063 
 
 
-
 
NC_011894  Mnod_1016  cyclic nucleotide-binding protein  31.51 
 
 
149 aa  66.2  0.0000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  28.06 
 
 
224 aa  66.2  0.0000000001  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  32.31 
 
 
220 aa  65.9  0.0000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_007298  Daro_3546  cyclic nucleotide-binding  33.04 
 
 
124 aa  66.2  0.0000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.194157 
 
 
-
 
NC_007604  Synpcc7942_0664  cyclic nucleotide-binding  31.08 
 
 
449 aa  65.9  0.0000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0101822  normal 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  30.08 
 
 
231 aa  65.5  0.0000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_010505  Mrad2831_0617  cyclic nucleotide-binding protein  35.71 
 
 
577 aa  65.1  0.0000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.340501  normal 
 
 
-
 
NC_013440  Hoch_3368  putative transcriptional regulator, Crp/Fnr family  30.47 
 
 
503 aa  64.7  0.0000000004  Haliangium ochraceum DSM 14365  Bacteria  decreased coverage  0.00879958  normal  0.135189 
 
 
-
 
NC_014248  Aazo_1954  putative Crp/Fnr family transcriptional regulator  27.86 
 
 
141 aa  64.7  0.0000000005  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  29.5 
 
 
225 aa  64.3  0.0000000006  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_009439  Pmen_0998  cyclic nucleotide-binding protein  32.41 
 
 
265 aa  63.9  0.0000000007  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00000000222196  unclonable  1.0277600000000001e-18 
 
 
-
 
NC_007492  Pfl01_1398  cyclic nucleotide-binding protein  30.46 
 
 
157 aa  63.9  0.0000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.908167  normal 
 
 
-
 
BN001303  ANIA_04987  cAMP-dependent protein kinase regulatory subunit (PKA regulatory subunit) [Source:UniProtKB/Swiss-Prot;Acc:O59922]  31.82 
 
 
412 aa  63.5  0.0000000009  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.599779  normal  0.51731 
 
 
-
 
NC_009767  Rcas_2894  cyclic nucleotide-binding protein  31.2 
 
 
482 aa  63.2  0.000000001  Roseiflexus castenholzii DSM 13941  Bacteria  decreased coverage  0.00660929  normal 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  26.9 
 
 
222 aa  63.2  0.000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_010505  Mrad2831_4104  cyclic nucleotide-binding protein  26.03 
 
 
163 aa  63.5  0.000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.374225 
 
 
-
 
NC_009523  RoseRS_3166  cyclic nucleotide-binding protein  31.2 
 
 
482 aa  63.2  0.000000001  Roseiflexus sp. RS-1  Bacteria  decreased coverage  0.00363184  normal 
 
 
-
 
NC_013037  Dfer_1108  putative transcriptional regulator, Crp/Fnr family  29.01 
 
 
1075 aa  63.2  0.000000001  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.000733786  normal  0.267995 
 
 
-
 
NC_002967  TDE2725  cyclic nucleotide binding/GGDEF domain-containing protein  27.66 
 
 
322 aa  62.8  0.000000002  Treponema denticola ATCC 35405  Bacteria  normal  0.792666  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  27.59 
 
 
252 aa  62.4  0.000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_009565  TBFG_13760  hypothetical protein  34.75 
 
 
1065 aa  62.4  0.000000002  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.217439 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  26.09 
 
 
225 aa  62.4  0.000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_4027  cyclic nucleotide-binding protein  30.37 
 
 
413 aa  62.4  0.000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
BN001303  ANIA_04510  cyclic nucleotide-binding domain protein (AFU_orthologue; AFUA_2G03170)  31.3 
 
 
923 aa  62  0.000000003  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal 
 
 
-
 
NC_013440  Hoch_3345  cyclic nucleotide-binding protein  29.55 
 
 
417 aa  62  0.000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.254717  normal 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  28.68 
 
 
222 aa  61.2  0.000000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_010424  Daud_2002  cyclic nucleotide-binding protein  32.14 
 
 
641 aa  60.8  0.000000006  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  29.92 
 
 
219 aa  60.1  0.00000001  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_007413  Ava_3692  cyclic nucleotide-binding domain-containing protein  27.34 
 
 
146 aa  60.1  0.00000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  26.28 
 
 
242 aa  60.1  0.00000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_007778  RPB_0380  cyclic nucleotide-binding domain-containing protein  29.75 
 
 
148 aa  60.1  0.00000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0441  cyclic nucleotide-binding  28.93 
 
 
148 aa  59.7  0.00000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.309044  normal  0.811617 
 
 
-
 
NC_011726  PCC8801_2732  cyclic nucleotide-binding protein  29.77 
 
 
425 aa  59.3  0.00000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  28.15 
 
 
224 aa  59.3  0.00000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_013161  Cyan8802_3370  putative transcriptional regulator, Crp/Fnr family  29.77 
 
 
425 aa  59.3  0.00000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  27.27 
 
 
226 aa  58.9  0.00000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_010511  M446_1398  cyclic nucleotide-binding protein  28.47 
 
 
168 aa  58.5  0.00000003  Methylobacterium sp. 4-46  Bacteria  normal  0.144588  normal  0.108065 
 
 
-
 
NC_013131  Caci_8335  putative transcriptional regulator, Crp/Fnr family  34.65 
 
 
209 aa  58.5  0.00000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.339186  normal 
 
 
-
 
NC_009077  Mjls_2527  cyclic nucleotide-binding protein  27.74 
 
 
143 aa  58.9  0.00000003  Mycobacterium sp. JLS  Bacteria  normal  normal  0.122265 
 
 
-
 
NC_008048  Sala_0343  cyclic nucleotide-binding protein  26.83 
 
 
811 aa  58.5  0.00000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0783507  normal 
 
 
-
 
NC_008146  Mmcs_2490  cyclic nucleotide-binding protein  27.74 
 
 
143 aa  58.9  0.00000003  Mycobacterium sp. MCS  Bacteria  normal  0.529165  n/a   
 
 
-
 
NC_008705  Mkms_2535  cyclic nucleotide-binding protein  27.74 
 
 
143 aa  58.9  0.00000003  Mycobacterium sp. KMS  Bacteria  normal  0.187626  normal  0.577012 
 
 
-
 
NC_009485  BBta_5447  voltage-dependent potassium channel  27.4 
 
 
409 aa  58.5  0.00000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.532768  normal  0.0697598 
 
 
-
 
NC_011729  PCC7424_3804  MscS Mechanosensitive ion channel  27.54 
 
 
495 aa  58.5  0.00000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010501  PputW619_3891  cyclic nucleotide-binding protein  27.78 
 
 
155 aa  58.5  0.00000004  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5025  putative transcriptional regulator, Crp/Fnr family  28.06 
 
 
1056 aa  58.5  0.00000004  Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.00524189  normal 
 
 
-
 
NC_002967  TDE1298  cyclic nucleotide binding domain-containing protein  27.21 
 
 
177 aa  57.8  0.00000005  Treponema denticola ATCC 35405  Bacteria  hitchhiker  0.000825589  n/a   
 
 
-
 
NC_007925  RPC_4038  cyclic nucleotide-binding domain-containing protein  29.58 
 
 
409 aa  57.8  0.00000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0491  cyclic nucleotide-binding protein  33.59 
 
 
410 aa  57.8  0.00000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0215963  n/a   
 
 
-
 
NC_002967  TDE0102  cyclic nucleotide-binding protein  31.16 
 
 
430 aa  57.4  0.00000006  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4818  cyclic nucleotide-binding protein  33.33 
 
 
332 aa  57.4  0.00000006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0931859  normal  0.928656 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  26.87 
 
 
228 aa  57.8  0.00000006  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  29.2 
 
 
228 aa  57.4  0.00000006  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_013501  Rmar_2556  putative transcriptional regulator, Crp/Fnr family  25.19 
 
 
198 aa  57.4  0.00000007  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  29.93 
 
 
225 aa  57.4  0.00000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_009565  TBFG_12585  hypothetical protein  28.47 
 
 
583 aa  57  0.00000008  Mycobacterium tuberculosis F11  Bacteria  normal  0.274213  normal  0.619754 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>