| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1108 |
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| Symbol | |
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| ID | 8224679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1321963 |
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| End bp | 1325190 |
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| Gene Length | 3228 bp |
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| Protein Length | 1075 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644928970 |
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| Product | putative transcriptional regulator, Crp/Fnr family |
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| Protein accession | YP_003085522 |
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| Protein GI | 255034901 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000733786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.267995 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCCAT TTCTAAGCCA AAACCGCTTC ACGAAGTCCA TTAACCCGCA AACGATCCTT
TTTTTCTTTC ATAACTTCTT CACGAATGTC GGTACCACGC TGGTGTACGT CTCCGCCAAT
GTACTGCTCC TCGAAAACCA CCCTGAATAC TCGCTCCCGC TTGCCTACAT CGCCGCCGCG
CTGGCCGTGA TGGTTTCGGG CAAGATTTAC GAGCATTTCG AACATCACCT TTTATTGAAA
AAGCTGAGCC TCGGGACGAT GCTTTCGGCG TTGTTCATGG TAGTGGTGGT CATGGGCCTG
CTGCTGGTGG GCCACGGCGT GGCTACGGCC ATTGCCGTGA TGGTGGGTTA CCGCGTCATC
TACCTGCTCA TCAACCTGGA ATTCTGGGGG TTATCTGCAT TGGTTTTTGA TGTACGCCAA
AGCAAAAGGC TGTTCAGCGT GATCGGCTCG GGCGATATGC CTGCCAAAGC GCTGGGTGCT
GTGCTCACGG TGCTGATCCA TTCGCCGTCG GTGCTGACTA TTTTGCTGGC TATCTCGCTG
GTCTTCTTTG CATTGGCATT CTACACACAA ATCCTCACCT TCCGCCATAC CGACATTCCC
AACCCGCACC ACGCCCGCAC GCGGACAACG GAATCGGATT CGCGCATTAT TCAGAAATAT
TTCGGCGGCA ATAAGCTGCT CACGTCGCTT TGCATTGGAA TGGTGGCCAT TGCCGCGACG
GCGACGTGGA TCGAGTACCA TTTCTTTGTG AATGTCAAAT ACAAATTCCA TAGTCAGCAC
GATGTGATCG TATTCGTGGG TTCGCTGCTC ACGCTCACCT ATGTGATTTC GACGTTTGTT
AAAATGCTGT TTTCGAGCAA AACTGTGGAG CGGTTCGGCA TTAAACTTAC CTTATACCTG
CTGCCGCTCA CGACGATCGC GATCTCGCTC GGCTTGCTGG TATCGTCGTA TTTCCGGAAA
GACGAGCCTT CGCTGCTGGC CTATTACTGC ATTGCCTATT TGCTTTTCGA GCTCGTGAGA
AGGACCATTT TCGACCCGGT TTTCCTAGTG TTGTTCCAAC CGCTTTCCAC CAAAACGCGT
TTAAAGGGCC ACACGCTGGC GAAAGGACTT TTTGAGCCGC TGGGTATGCT CATTGCCGGC
GCGATGCTCT GGGTCATTTA CACGCAGCAA TGGAGCGACA TTAGCCTCAC ATTCGACCTA
TCCCTGCTTT TTGCGCTCGG CGCATTGGTT GTATTCCGCA AAACCTACCG CCATTATATG
CAGGAGCTCA AATCGGCGAT CAGCAAGCGA TTCATCCGCA GCGGCGAAAT GGCATCCCCT
GCCGAAGCAT TGCCGATCAT CACCGAAAAC CTCCAAAGCG ACCGCAAGGA AGAAGTGCTG
AATGCGATCG ACTGGCTCGC GCGGAACAAA GTTTCGCTCT TCCGTAAGCA CGCCGACGAG
CTGCTGGAAA GCCCGTTCGT GCAGGTAAGG TTAAAGACGT TGCAGACGCT CTCGACCCTC
GAAAAGCCCG AGCTTTCGGA TGCATTCATC CAGTACATCG AGGAAGAACC CGACGCGGCC
TGCCAGGTAC TCGCCGTGCG CCTGGCCTGT GCGAACGGAC GCCTGAACGA CGAGCAAACG
GCCCATTTCC TGGCCCACAG CGACCTCGAC ATTGTGAAAG GCACGATCAT CGGCTGCTGG
GAAGCCGGGA AAGCATTGCC GCTGATCCAC GGTACTTTGC AACGCCTTTT CGGCTCCGAG
CAGGAAAGCC ACCAGCTCGC CGCGCTCGAC TGCCTGAAAG TAACGGGTGT CAATTCCTAC
GAAAATCTGC TCAAAAGCTG CATTCAAAAC GGCTCGCAGC GTGTACGCAA CTACGCCATC
GAAGTAGCCG CCACGGTGGG TTCCCCTGCC CTGCTGCGCG ACCTGCGCCT GGTCCTCACC
GGCACATTAA CCCCCTCGAC GATCCAGGCG CTCATCCATT CAGGCGACCT CGGCATCCGC
ATTATCGAGG GTTGGTTACA GGAAGATTCC ACCGGCGAGC GCATCCGAAC ATTCATTAAA
AGTGCTGAAA AGGGCAAACA TGAATTTGTA TTGCAAATAC TTTTTAACCT TATTAAAAAT
ATCTACCATA ATAAACTATC AATTAATACA GAAAATATTG ATAGTTACAC CCATATTGCG
GCGCTAAAGG TGCTGAGTCA ATACACATTA ATAACTGACT ATCAAACGCT TATTCCCGAG
TTTGTGGAAA AAGAGCTTAT CCATGCAGGC CAGTTGCTCA ACGGAATGGA CGCCAGCGAA
ACCGATATCA GCTGGAACAA TGCATTGGAA TATGAGCTGC AACTGACGGC GCAACGGCTG
TTTTACCTGT TCATGATGCA GTATGACAAG GAAGCTGTGC AGAGCGCGTG GAAGGGAATC
CGGCAGGCGA GCAAGGAGAA ACGGGCCAAT TCCCTCGAAC TGATCGAAAG CCTTTTGCCG
CGGATGCTGT ACCCGTCGCT GCATGCATTG TTTGAAAACA TCTCCATTCA GAAAAAGCGC
GACGCGCTGC GCCAGTACAT GGGCAATGTG GAACCGGGGC TCTCGCTGAT CACGATGATC
CTTTCCCAGG AAGAACGGGC ATTCACGACG TGGACCATCG CGCTCGCCGT GGGCAGATGC
GACGCGGCCG AGGCCGACCT CGTGCATCTC GAGAAACTGG CGAACCACTC GTCCCGCCTG
GTTCGTGAGG CAGTATCTCA AAAATATGCA GCCCTGGCCC AGCGGCCCGA TCTTAAATTT
ACGCTTCGAA TCCCTATGAA ACACGCCGAA CCTACCCAGC AGATTTCCGA AATGGAAAGG
GTGATTGTCC TTAAAAACAC CCAGCTTTTC GCACAGACGC CCGAGAACGT GCTCAGCTCC
ATCGCCCCGA TTATGAAGGA AATTACGTAC ACCGACGGGC AGGAAATATT TGCAAAAGGC
GACCTCGGCG ACTCGATGTA CATCATTTAC ACCGGCCAGG TAGGCATTTA CGACGGCCCG
AAACAGCTTG CATTATTCGA CAAGGGCGAG ATTTTCGGGG AGCTCTCATT GCTCGATACC
GAGCCGCGTT CCGCCACGAC CGTCGCCGAA ACCGACTCGC TTGTGTTCCG CATCGACCAG
GAAGATTTCT TTGAACTGAT GGAAGAACGC GACGAAATCC TGCGCAATGT GCTCCGCATT
CTGTGCCAGC GCATCCGCGT GCAGAATGAG AAAATGCGCC AGCTATAA
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| Protein sequence | MIPFLSQNRF TKSINPQTIL FFFHNFFTNV GTTLVYVSAN VLLLENHPEY SLPLAYIAAA
LAVMVSGKIY EHFEHHLLLK KLSLGTMLSA LFMVVVVMGL LLVGHGVATA IAVMVGYRVI
YLLINLEFWG LSALVFDVRQ SKRLFSVIGS GDMPAKALGA VLTVLIHSPS VLTILLAISL
VFFALAFYTQ ILTFRHTDIP NPHHARTRTT ESDSRIIQKY FGGNKLLTSL CIGMVAIAAT
ATWIEYHFFV NVKYKFHSQH DVIVFVGSLL TLTYVISTFV KMLFSSKTVE RFGIKLTLYL
LPLTTIAISL GLLVSSYFRK DEPSLLAYYC IAYLLFELVR RTIFDPVFLV LFQPLSTKTR
LKGHTLAKGL FEPLGMLIAG AMLWVIYTQQ WSDISLTFDL SLLFALGALV VFRKTYRHYM
QELKSAISKR FIRSGEMASP AEALPIITEN LQSDRKEEVL NAIDWLARNK VSLFRKHADE
LLESPFVQVR LKTLQTLSTL EKPELSDAFI QYIEEEPDAA CQVLAVRLAC ANGRLNDEQT
AHFLAHSDLD IVKGTIIGCW EAGKALPLIH GTLQRLFGSE QESHQLAALD CLKVTGVNSY
ENLLKSCIQN GSQRVRNYAI EVAATVGSPA LLRDLRLVLT GTLTPSTIQA LIHSGDLGIR
IIEGWLQEDS TGERIRTFIK SAEKGKHEFV LQILFNLIKN IYHNKLSINT ENIDSYTHIA
ALKVLSQYTL ITDYQTLIPE FVEKELIHAG QLLNGMDASE TDISWNNALE YELQLTAQRL
FYLFMMQYDK EAVQSAWKGI RQASKEKRAN SLELIESLLP RMLYPSLHAL FENISIQKKR
DALRQYMGNV EPGLSLITMI LSQEERAFTT WTIALAVGRC DAAEADLVHL EKLANHSSRL
VREAVSQKYA ALAQRPDLKF TLRIPMKHAE PTQQISEMER VIVLKNTQLF AQTPENVLSS
IAPIMKEITY TDGQEIFAKG DLGDSMYIIY TGQVGIYDGP KQLALFDKGE IFGELSLLDT
EPRSATTVAE TDSLVFRIDQ EDFFELMEER DEILRNVLRI LCQRIRVQNE KMRQL
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