More than 300 homologs were found in PanDaTox collection
for query gene Rleg_7131 on replicon NC_012858
Organism: Rhizobium leguminosarum bv. trifolii WSM1325



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012858  Rleg_7131  putative transcriptional regulator, Crp/Fnr family  100 
 
 
155 aa  313  5e-85  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.331754 
 
 
-
 
NC_011366  Rleg2_5981  cyclic nucleotide-binding protein  96.77 
 
 
155 aa  305  1.0000000000000001e-82  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5607  cAMP-dependent protein kinase regulatory subunit  78.67 
 
 
154 aa  247  5e-65  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4601  cyclic nucleotide-binding protein  71.33 
 
 
154 aa  226  1e-58  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.930738 
 
 
-
 
NC_011989  Avi_3942  cAMP-dependent protein kinase regulatory subunit  47.65 
 
 
154 aa  151  2.9999999999999998e-36  Agrobacterium vitis S4  Bacteria  normal  0.644852  n/a   
 
 
-
 
NC_011894  Mnod_4405  cyclic nucleotide-binding protein  48.65 
 
 
148 aa  143  9e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2719  cyclic nucleotide-binding protein  48.65 
 
 
151 aa  142  2e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.460468  normal  0.384505 
 
 
-
 
NC_010505  Mrad2831_5013  cyclic nucleotide-binding protein  46.94 
 
 
147 aa  140  5e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.32822  normal  0.191008 
 
 
-
 
NC_010725  Mpop_3019  cyclic nucleotide-binding protein  45.07 
 
 
149 aa  132  1.9999999999999998e-30  Methylobacterium populi BJ001  Bacteria  normal  0.852704  normal 
 
 
-
 
NC_011757  Mchl_3122  cyclic nucleotide-binding protein  44.37 
 
 
149 aa  127  5.0000000000000004e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.196103 
 
 
-
 
NC_010172  Mext_2896  cyclic nucleotide-binding  44.37 
 
 
194 aa  127  6e-29  Methylobacterium extorquens PA1  Bacteria  normal  0.633977  normal 
 
 
-
 
NC_009720  Xaut_1892  cyclic nucleotide-binding protein  43.54 
 
 
147 aa  116  9.999999999999999e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  0.326195  normal 
 
 
-
 
NC_008554  Sfum_3249  cyclic nucleotide-binding protein  34.29 
 
 
171 aa  102  1e-21  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR2005  cyclic nucleotide-binding protein  35.48 
 
 
153 aa  93.2  1e-18  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1928  cyclic nucleotide-binding protein  35.48 
 
 
153 aa  93.2  1e-18  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3764  cyclic nucleotide-binding protein  35.1 
 
 
151 aa  88.2  4e-17  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0964  cyclic nucleotide-binding protein  33.06 
 
 
152 aa  87.8  5e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4089  putative transcriptional regulator, Crp/Fnr family  34.44 
 
 
151 aa  87  9e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.998394  normal 
 
 
-
 
NC_009719  Plav_1291  cyclic nucleotide-binding protein  33.8 
 
 
164 aa  86.3  2e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.234039  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  31.88 
 
 
243 aa  82.4  0.000000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  31.85 
 
 
219 aa  81.3  0.000000000000005  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_009972  Haur_4167  cyclic nucleotide-binding protein  28.38 
 
 
570 aa  80.1  0.00000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  33.33 
 
 
224 aa  78.2  0.00000000000003  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_014248  Aazo_1954  putative Crp/Fnr family transcriptional regulator  29.5 
 
 
141 aa  75.9  0.0000000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0331  cyclic nucleotide-binding protein  33.33 
 
 
150 aa  75.5  0.0000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0211845 
 
 
-
 
NC_011831  Cagg_2419  cyclic nucleotide-binding protein  27.94 
 
 
563 aa  75.9  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.871595  normal 
 
 
-
 
NC_007406  Nwi_0086  cyclic nucleotide-binding protein  31.29 
 
 
160 aa  74.7  0.0000000000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.929528  normal  0.0740226 
 
 
-
 
NC_007925  RPC_0279  cyclic nucleotide-binding domain-containing protein  31.97 
 
 
149 aa  74.3  0.0000000000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.294504 
 
 
-
 
NC_008254  Meso_3425  cyclic nucleotide-binding protein  29.1 
 
 
151 aa  72.4  0.000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_3055  cyclic nucleotide-binding protein  32.26 
 
 
151 aa  72.8  0.000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.517471  normal 
 
 
-
 
NC_008554  Sfum_4030  cyclic nucleotide-binding protein  23.65 
 
 
173 aa  72  0.000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.900362 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  30.94 
 
 
225 aa  71.2  0.000000000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  30.94 
 
 
225 aa  71.2  0.000000000005  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0998  cyclic nucleotide-binding protein  35.14 
 
 
265 aa  70.9  0.000000000006  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00000000222196  unclonable  1.0277600000000001e-18 
 
 
-
 
NC_009523  RoseRS_3166  cyclic nucleotide-binding protein  33.6 
 
 
482 aa  70.5  0.000000000008  Roseiflexus sp. RS-1  Bacteria  decreased coverage  0.00363184  normal 
 
 
-
 
NC_011884  Cyan7425_0841  cyclic nucleotide-binding protein  26.72 
 
 
160 aa  70.5  0.000000000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.108052 
 
 
-
 
NC_009767  Rcas_2894  cyclic nucleotide-binding protein  33.6 
 
 
482 aa  70.5  0.000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  decreased coverage  0.00660929  normal 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  30.15 
 
 
222 aa  70.5  0.000000000009  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  27.94 
 
 
225 aa  68.9  0.00000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4730  cyclic nucleotide-binding protein  30.47 
 
 
286 aa  69.3  0.00000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.813554  normal  0.722063 
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  29.92 
 
 
219 aa  68.9  0.00000000002  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_011757  Mchl_1854  cyclic nucleotide-binding protein  29.45 
 
 
155 aa  68.9  0.00000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.795804 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  30.15 
 
 
242 aa  68.6  0.00000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_007298  Daro_3546  cyclic nucleotide-binding  34.78 
 
 
124 aa  68.6  0.00000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.194157 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  30.3 
 
 
231 aa  68.6  0.00000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_010172  Mext_1575  cyclic nucleotide-binding  30.61 
 
 
155 aa  68.2  0.00000000004  Methylobacterium extorquens PA1  Bacteria  normal  0.6817  normal  0.0500798 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  29.71 
 
 
225 aa  68.2  0.00000000004  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  33.82 
 
 
225 aa  67.8  0.00000000005  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1664  cyclic nucleotide-binding protein  28.38 
 
 
159 aa  67.8  0.00000000006  Methylobacterium populi BJ001  Bacteria  normal  normal  0.617914 
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  31.71 
 
 
229 aa  67.8  0.00000000006  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_011989  Avi_4229  hypothetical protein  28.29 
 
 
151 aa  67.4  0.00000000007  Agrobacterium vitis S4  Bacteria  unclonable  0.000114025  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  28.89 
 
 
226 aa  67.4  0.00000000007  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0093  cyclic nucleotide-binding domain-containing protein  31.29 
 
 
149 aa  67.4  0.00000000007  Nitrobacter hamburgensis X14  Bacteria  normal  0.132878  n/a   
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  30.77 
 
 
227 aa  67.4  0.00000000007  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_008146  Mmcs_2490  cyclic nucleotide-binding protein  31.93 
 
 
143 aa  67.4  0.00000000007  Mycobacterium sp. MCS  Bacteria  normal  0.529165  n/a   
 
 
-
 
NC_009077  Mjls_2527  cyclic nucleotide-binding protein  31.93 
 
 
143 aa  67.4  0.00000000007  Mycobacterium sp. JLS  Bacteria  normal  normal  0.122265 
 
 
-
 
NC_008705  Mkms_2535  cyclic nucleotide-binding protein  31.93 
 
 
143 aa  67.4  0.00000000007  Mycobacterium sp. KMS  Bacteria  normal  0.187626  normal  0.577012 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  31.54 
 
 
220 aa  67  0.00000000008  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_009720  Xaut_1772  cyclic nucleotide-binding protein  28.57 
 
 
161 aa  67.4  0.00000000008  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0691544 
 
 
-
 
NC_009656  PSPA7_5420  hypothetical protein  34.23 
 
 
265 aa  67  0.00000000009  Pseudomonas aeruginosa PA7  Bacteria  hitchhiker  0.00117771  n/a   
 
 
-
 
NC_008554  Sfum_4027  cyclic nucleotide-binding protein  33.33 
 
 
413 aa  67  0.00000000009  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3692  cyclic nucleotide-binding domain-containing protein  28.12 
 
 
146 aa  66.2  0.0000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0441  cyclic nucleotide-binding  29.25 
 
 
148 aa  67  0.0000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.309044  normal  0.811617 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  30.07 
 
 
228 aa  66.6  0.0000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_008463  PA14_62260  hypothetical protein  34.23 
 
 
265 aa  67  0.0000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000000000000560596  normal  0.205453 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  29.63 
 
 
224 aa  66.2  0.0000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  28.79 
 
 
225 aa  66.2  0.0000000002  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  30.3 
 
 
234 aa  65.9  0.0000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_013037  Dfer_1108  putative transcriptional regulator, Crp/Fnr family  29.77 
 
 
1075 aa  65.9  0.0000000002  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.000733786  normal  0.267995 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  28.68 
 
 
225 aa  65.1  0.0000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0617  cyclic nucleotide-binding protein  34.34 
 
 
577 aa  65.5  0.0000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.340501  normal 
 
 
-
 
NC_007519  Dde_0723  cyclic nucleotide-binding domain-containing protein  26.77 
 
 
173 aa  64.7  0.0000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12585  hypothetical protein  30.99 
 
 
583 aa  64.7  0.0000000004  Mycobacterium tuberculosis F11  Bacteria  normal  0.274213  normal  0.619754 
 
 
-
 
NC_002967  TDE1298  cyclic nucleotide binding domain-containing protein  27.94 
 
 
177 aa  64.3  0.0000000006  Treponema denticola ATCC 35405  Bacteria  hitchhiker  0.000825589  n/a   
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  25.52 
 
 
222 aa  64.3  0.0000000006  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_011891  A2cp1_1612  cyclic nucleotide-binding protein  28.15 
 
 
154 aa  63.5  0.0000000009  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1016  cyclic nucleotide-binding protein  31.54 
 
 
149 aa  63.5  0.0000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  30.37 
 
 
222 aa  63.5  0.0000000009  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_013440  Hoch_3368  putative transcriptional regulator, Crp/Fnr family  28.12 
 
 
503 aa  63.2  0.000000001  Haliangium ochraceum DSM 14365  Bacteria  decreased coverage  0.00879958  normal  0.135189 
 
 
-
 
NC_009338  Mflv_1915  cyclic nucleotide-binding protein  38.84 
 
 
329 aa  63.5  0.000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.379435  normal  0.183424 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  29.29 
 
 
226 aa  63.5  0.000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  28.15 
 
 
228 aa  62.8  0.000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0380  cyclic nucleotide-binding domain-containing protein  30.65 
 
 
148 aa  62.8  0.000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  28.28 
 
 
252 aa  62  0.000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  28.79 
 
 
226 aa  61.6  0.000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  29.66 
 
 
225 aa  62  0.000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4104  cyclic nucleotide-binding protein  27.81 
 
 
163 aa  62  0.000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.374225 
 
 
-
 
NC_011145  AnaeK_1517  cyclic nucleotide-binding protein  27.41 
 
 
154 aa  61.6  0.000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.0629843  n/a   
 
 
-
 
NC_009565  TBFG_13760  hypothetical protein  34.88 
 
 
1065 aa  61.6  0.000000004  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.217439 
 
 
-
 
NC_008781  Pnap_3212  CRP/FNR family transcriptional regulator  28.79 
 
 
229 aa  61.6  0.000000004  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0543887  normal 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  32.35 
 
 
225 aa  61.2  0.000000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_009720  Xaut_2796  cyclic nucleotide-binding protein  28.35 
 
 
453 aa  61.2  0.000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  0.180681  normal  0.733886 
 
 
-
 
NC_009972  Haur_3689  cyclic nucleotide-binding protein  28.47 
 
 
454 aa  61.2  0.000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.120597  n/a   
 
 
-
 
NC_007413  Ava_1433  cyclic nucleotide-binding domain-containing protein  32.35 
 
 
408 aa  60.8  0.000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  0.532362  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  28.57 
 
 
226 aa  60.8  0.000000007  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_007760  Adeh_2352  cyclic nucleotide-binding protein  27.41 
 
 
154 aa  60.5  0.000000009  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.674498  n/a   
 
 
-
 
NC_013440  Hoch_3345  cyclic nucleotide-binding protein  27.48 
 
 
417 aa  60.5  0.000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  0.254717  normal 
 
 
-
 
NC_007604  Synpcc7942_0664  cyclic nucleotide-binding  29.2 
 
 
449 aa  59.7  0.00000001  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0101822  normal 
 
 
-
 
NC_007604  Synpcc7942_1814  cyclic nucleotide-binding domain-containing protein  27.78 
 
 
242 aa  59.7  0.00000001  Synechococcus elongatus PCC 7942  Bacteria  normal  0.38579  normal  0.245711 
 
 
-
 
NC_013440  Hoch_5417  cyclic nucleotide-binding protein  28.24 
 
 
419 aa  59.7  0.00000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0881735  normal  0.0681678 
 
 
-
 
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