Gene Haur_4167 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_4167 
Symbol 
ID5736028 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand
Start bp5314116 
End bp5315828 
Gene Length1713 bp 
Protein Length570 aa 
Translation table11 
GC content53% 
IMG OID641281321 
Productcyclic nucleotide-binding protein 
Protein accessionYP_001546927 
Protein GI159900680 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
[COG2172] Anti-sigma regulatory factor (Ser/Thr protein kinase)
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTATAT CTGAAGGTCG CAGCATTGAG ATTGATGCCC GTTGGGAAAA CCTCGCCGCC 
CTCACCGATT ACACCACCGA GATCGAAACT GAATTTGCCC TAACCAGCGA ACAAGCCTTT
GTGCTGGGTT TAGTGATCGA AGAAATTGTC ACCAATATCA TTAAATATAG CTATGCCGAG
CAAGGTGGCC CGCTACAATT GCACAGCACG CTCGAAAATG GCGAGCTAGC GATTCGGATT
CTTGATCGCG GCCAGCCATT TAACCCCGAC GATGCTGATC CGCCCGATCT CTTCGCCAGC
ATCCACGATC GTCAAGTTGG CGGTTTGGGG GTGTTTTTGG TGCGCGAAAT GGCCGATTCG
ATCACCTACC ACCATGATGA TGCCAGTGGT TGGAATACCT TGATCGTCAC CAAAAAAGCT
TCAACTGAGG CCAGCATTGC TCCGTTGGTC GAGTTTTTAG AGCAATTGCC ATTGTTCCAC
GAAGTTGATC AGGCGACGAT TCAAAATTTG GTACAAAGTG CTGAGCATGT GCGACTTGCC
CCAGGCGAAA CATTATTCAG CGAAGGCGAT AGCGGCGACG ATTGCTATAT TGTGATGGCT
GGCGATGTAG ATGTAATCAA AGCGCTGGCG ACCGAAACAA TTTTGCTGGA GCGCTGTCGG
CCTGGGGCAA TTTTGGGCGA AATGGCTTTG ATCGATAATA GCCCTCGCGC GGCTAGCGTG
CGGGCGCGAA CCGCCGCAAC CCTGTTGCGC ATCACCGAGG CCGAATTTGT AACCTTGATG
CATGCCAACC CAACCACAGC CATGGCGTTG CTGCGTGGCG GCACAACGCG CCTGCGTCAG
GCAAATGCGC AAATGTTGGG TGGCCTCGAA AAGAAGAATC TTGAACTAGC GAGCGCCTAC
GAAGAACTCA AATCGGCCCA GCAAGAACTG TTGCGCCTTG AACGGATTGA GCGGGAATTG
GCGATTGCCC GCGATATTCA GCGCTTCTTT TTGCCGCCCA ACATTCCTCA ACCTGAGGGC
TGGCAAATTG TGGCTTTCAA CCAAGGCGCG TTAGAGGTTG GCGGCGATTT TTACGATGTG
ATCAAGCTTG GCGGCAATAA AATTGGTTTG GTCGTGGCCG ATGCCTGTGG CAAAGGCGTG
CCAGCGGCCT TGTTTGTGGC GCTGACGCGC TCGTTGCTGC ATTCCAACGC TCAATCGCTG
GCAGCGCGGC CTGAAATTGC GACTGATCCG TTGGCCTTGC TGACGGCGGC AATCACCATG
ACCAATAACT ACATTTCGCG TGAACATGGC GCAAGCAATA TGTTCACGAC CCTGTTTTTT
GCCGCATTTG ATCCGCAAAC TGGCGAGTTG GCCTATGTCA ACGCTGGCCA TAACCCGCCG
ATTATCATCA ATCGCACCAG CCGTACTTTG CGTTATTTAG AAGGCACAGG CTTGCCCTTG
GGGATTATGG AAGATCTGCC ATACAAGGCC AAGAGCACCA TCCTCGCCGC CGATGAATAT
TTCTTGGGCT TTACCGACGG CGCAACCGAG GCCTTTAATC TGGCAGGCGA GGTGTTTGAT
GATGCAGCCT TGACCAATGT GCTCAAAAAT GGCGATTTCC ACGATGCCCA ATCATTGCTC
GACAGCGTGT GGCGGGCAAT CGAGAGCTTT GTTGGCGAAG CTGAACAAGC CGATGACATT
ACCTTGCTAA CGGTTAGTCG TAATGGTTCG TAG
 
Protein sequence
MAISEGRSIE IDARWENLAA LTDYTTEIET EFALTSEQAF VLGLVIEEIV TNIIKYSYAE 
QGGPLQLHST LENGELAIRI LDRGQPFNPD DADPPDLFAS IHDRQVGGLG VFLVREMADS
ITYHHDDASG WNTLIVTKKA STEASIAPLV EFLEQLPLFH EVDQATIQNL VQSAEHVRLA
PGETLFSEGD SGDDCYIVMA GDVDVIKALA TETILLERCR PGAILGEMAL IDNSPRAASV
RARTAATLLR ITEAEFVTLM HANPTTAMAL LRGGTTRLRQ ANAQMLGGLE KKNLELASAY
EELKSAQQEL LRLERIEREL AIARDIQRFF LPPNIPQPEG WQIVAFNQGA LEVGGDFYDV
IKLGGNKIGL VVADACGKGV PAALFVALTR SLLHSNAQSL AARPEIATDP LALLTAAITM
TNNYISREHG ASNMFTTLFF AAFDPQTGEL AYVNAGHNPP IIINRTSRTL RYLEGTGLPL
GIMEDLPYKA KSTILAADEY FLGFTDGATE AFNLAGEVFD DAALTNVLKN GDFHDAQSLL
DSVWRAIESF VGEAEQADDI TLLTVSRNGS