More than 300 homologs were found in PanDaTox collection
for query gene Mpop_3019 on replicon NC_010725
Organism: Methylobacterium populi BJ001



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010725  Mpop_3019  cyclic nucleotide-binding protein  100 
 
 
149 aa  293  5e-79  Methylobacterium populi BJ001  Bacteria  normal  0.852704  normal 
 
 
-
 
NC_010172  Mext_2896  cyclic nucleotide-binding  95.97 
 
 
194 aa  281  2.0000000000000002e-75  Methylobacterium extorquens PA1  Bacteria  normal  0.633977  normal 
 
 
-
 
NC_011757  Mchl_3122  cyclic nucleotide-binding protein  95.97 
 
 
149 aa  281  2.0000000000000002e-75  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.196103 
 
 
-
 
NC_010505  Mrad2831_5013  cyclic nucleotide-binding protein  80.95 
 
 
147 aa  234  4e-61  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.32822  normal  0.191008 
 
 
-
 
NC_011894  Mnod_4405  cyclic nucleotide-binding protein  81.38 
 
 
148 aa  233  5.0000000000000005e-61  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2719  cyclic nucleotide-binding protein  77.78 
 
 
151 aa  223  5.0000000000000005e-58  Methylobacterium sp. 4-46  Bacteria  normal  0.460468  normal  0.384505 
 
 
-
 
NC_009620  Smed_4601  cyclic nucleotide-binding protein  47.92 
 
 
154 aa  135  2e-31  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.930738 
 
 
-
 
NC_012858  Rleg_7131  putative transcriptional regulator, Crp/Fnr family  45.07 
 
 
155 aa  132  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.331754 
 
 
-
 
NC_011366  Rleg2_5981  cyclic nucleotide-binding protein  44.37 
 
 
155 aa  129  1.0000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1892  cyclic nucleotide-binding protein  40.82 
 
 
147 aa  122  2e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  0.326195  normal 
 
 
-
 
NC_011988  Avi_5607  cAMP-dependent protein kinase regulatory subunit  42.66 
 
 
154 aa  122  2e-27  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3942  cAMP-dependent protein kinase regulatory subunit  38.52 
 
 
154 aa  100  6e-21  Agrobacterium vitis S4  Bacteria  normal  0.644852  n/a   
 
 
-
 
NC_004310  BR2005  cyclic nucleotide-binding protein  35.53 
 
 
153 aa  95.1  3e-19  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1928  cyclic nucleotide-binding protein  35.53 
 
 
153 aa  95.1  3e-19  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0964  cyclic nucleotide-binding protein  32.28 
 
 
152 aa  81.6  0.000000000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1291  cyclic nucleotide-binding protein  36.36 
 
 
164 aa  80.9  0.000000000000006  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.234039  normal 
 
 
-
 
NC_011884  Cyan7425_0840  cyclic nucleotide-binding protein  35.56 
 
 
350 aa  78.6  0.00000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.126759 
 
 
-
 
NC_009972  Haur_4167  cyclic nucleotide-binding protein  32.33 
 
 
570 aa  78.2  0.00000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0331  cyclic nucleotide-binding protein  35.25 
 
 
150 aa  75.5  0.0000000000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0211845 
 
 
-
 
NC_013037  Dfer_1108  putative transcriptional regulator, Crp/Fnr family  30.88 
 
 
1075 aa  74.7  0.0000000000004  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.000733786  normal  0.267995 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  31.62 
 
 
219 aa  74.3  0.0000000000005  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  30.6 
 
 
225 aa  73.9  0.0000000000006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4089  putative transcriptional regulator, Crp/Fnr family  34.43 
 
 
151 aa  73.9  0.0000000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.998394  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  30.15 
 
 
243 aa  73.9  0.0000000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_008554  Sfum_3249  cyclic nucleotide-binding protein  31.58 
 
 
171 aa  73.6  0.000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3764  cyclic nucleotide-binding protein  33.61 
 
 
151 aa  72.4  0.000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3425  cyclic nucleotide-binding protein  30.28 
 
 
151 aa  71.6  0.000000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0841  cyclic nucleotide-binding protein  32.82 
 
 
160 aa  71.2  0.000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.108052 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  31.34 
 
 
220 aa  70.9  0.000000000005  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  32.09 
 
 
224 aa  70.1  0.000000000009  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  29.86 
 
 
228 aa  68.9  0.00000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4893  cyclic nucleotide-binding protein  33.08 
 
 
237 aa  68.9  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3368  putative transcriptional regulator, Crp/Fnr family  36.15 
 
 
503 aa  68.2  0.00000000003  Haliangium ochraceum DSM 14365  Bacteria  decreased coverage  0.00879958  normal  0.135189 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  32.41 
 
 
225 aa  68.2  0.00000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_007406  Nwi_0086  cyclic nucleotide-binding protein  30.94 
 
 
160 aa  68.2  0.00000000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.929528  normal  0.0740226 
 
 
-
 
NC_007948  Bpro_0718  cyclic nucleotide-binding  28.97 
 
 
747 aa  67.8  0.00000000004  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00567448  normal 
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  31.47 
 
 
252 aa  68.2  0.00000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  29.71 
 
 
228 aa  67.8  0.00000000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_009720  Xaut_1772  cyclic nucleotide-binding protein  30.22 
 
 
161 aa  67.4  0.00000000006  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0691544 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  32.41 
 
 
225 aa  67.4  0.00000000006  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0144  cyclic nucleotide-binding domain-containing protein  32.87 
 
 
227 aa  67.4  0.00000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  0.993696  normal 
 
 
-
 
NC_008346  Swol_1598  hypothetical protein  34.23 
 
 
407 aa  67.4  0.00000000007  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.303519  n/a   
 
 
-
 
NC_009636  Smed_3055  cyclic nucleotide-binding protein  30.47 
 
 
151 aa  67  0.00000000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.517471  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  29.71 
 
 
226 aa  66.2  0.0000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_011831  Cagg_2419  cyclic nucleotide-binding protein  29.63 
 
 
563 aa  66.6  0.0000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.871595  normal 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  32.12 
 
 
223 aa  66.6  0.0000000001  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  34.35 
 
 
224 aa  66.6  0.0000000001  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_014248  Aazo_1954  putative Crp/Fnr family transcriptional regulator  25.93 
 
 
141 aa  66.2  0.0000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  33.09 
 
 
225 aa  66.2  0.0000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  30.43 
 
 
226 aa  64.7  0.0000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_007643  Rru_A3460  cyclic nucleotide-binding domain-containing protein  37.61 
 
 
644 aa  64.7  0.0000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  31.34 
 
 
225 aa  64.7  0.0000000004  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  30.43 
 
 
242 aa  64.3  0.0000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  33.58 
 
 
224 aa  64.3  0.0000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  31.03 
 
 
225 aa  64.3  0.0000000006  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_007964  Nham_0093  cyclic nucleotide-binding domain-containing protein  30.94 
 
 
149 aa  63.5  0.0000000009  Nitrobacter hamburgensis X14  Bacteria  normal  0.132878  n/a   
 
 
-
 
NC_011989  Avi_4229  hypothetical protein  32.06 
 
 
151 aa  63.5  0.0000000009  Agrobacterium vitis S4  Bacteria  unclonable  0.000114025  n/a   
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  28.26 
 
 
224 aa  63.5  0.000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_010505  Mrad2831_0617  cyclic nucleotide-binding protein  36.89 
 
 
577 aa  62.8  0.000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.340501  normal 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  32.82 
 
 
224 aa  62.8  0.000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  32.82 
 
 
224 aa  62.8  0.000000001  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  32.82 
 
 
224 aa  62.8  0.000000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_002967  TDE2725  cyclic nucleotide binding/GGDEF domain-containing protein  31.21 
 
 
322 aa  62.8  0.000000002  Treponema denticola ATCC 35405  Bacteria  normal  0.792666  n/a   
 
 
-
 
NC_007492  Pfl01_4796  cyclic nucleotide-binding (cNMP-bd) protein  30.19 
 
 
263 aa  62  0.000000002  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.00000000000370555  unclonable  0.0000216721 
 
 
-
 
NC_007498  Pcar_0452  cAMP-binding protein  35.48 
 
 
160 aa  62.4  0.000000002  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000000000045265  n/a   
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  32.82 
 
 
224 aa  62.4  0.000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_007604  Synpcc7942_1243  cyclic nucleotide-binding domain-containing protein  33.8 
 
 
231 aa  62.8  0.000000002  Synechococcus elongatus PCC 7942  Bacteria  hitchhiker  0.00145976  normal 
 
 
-
 
NC_008043  TM1040_3676  cyclic nucleotide-binding protein  34.48 
 
 
1043 aa  62.8  0.000000002  Ruegeria sp. TM1040  Bacteria  normal  0.88824  normal 
 
 
-
 
NC_008554  Sfum_4027  cyclic nucleotide-binding protein  31.65 
 
 
413 aa  62.4  0.000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  34.17 
 
 
224 aa  62.4  0.000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  32.82 
 
 
224 aa  62.4  0.000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  32.06 
 
 
224 aa  62.4  0.000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_007925  RPC_0279  cyclic nucleotide-binding domain-containing protein  29.1 
 
 
149 aa  61.6  0.000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.294504 
 
 
-
 
NC_008554  Sfum_1513  cyclic nucleotide-binding protein  30.95 
 
 
308 aa  62  0.000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.00604424  normal 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  31.39 
 
 
224 aa  61.6  0.000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_007958  RPD_0441  cyclic nucleotide-binding  30.37 
 
 
148 aa  61.2  0.000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.309044  normal  0.811617 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  28.47 
 
 
225 aa  61.2  0.000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  28.97 
 
 
225 aa  61.6  0.000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12585  hypothetical protein  32.06 
 
 
583 aa  60.8  0.000000005  Mycobacterium tuberculosis F11  Bacteria  normal  0.274213  normal  0.619754 
 
 
-
 
NC_007413  Ava_3692  cyclic nucleotide-binding domain-containing protein  27.64 
 
 
146 aa  60.8  0.000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0285  cyclic nucleotide-binding protein  29.93 
 
 
149 aa  60.8  0.000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.512507  n/a   
 
 
-
 
NC_007604  Synpcc7942_0664  cyclic nucleotide-binding  32 
 
 
449 aa  60.5  0.000000007  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0101822  normal 
 
 
-
 
NC_009972  Haur_3689  cyclic nucleotide-binding protein  34.03 
 
 
454 aa  60.5  0.000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.120597  n/a   
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  24.64 
 
 
225 aa  60.5  0.000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  27.54 
 
 
226 aa  60.5  0.000000008  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3546  cyclic nucleotide-binding  34.19 
 
 
124 aa  60.1  0.000000009  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.194157 
 
 
-
 
NC_009439  Pmen_0998  cyclic nucleotide-binding protein  27.27 
 
 
265 aa  60.1  0.000000009  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00000000222196  unclonable  1.0277600000000001e-18 
 
 
-
 
NC_011901  Tgr7_2797  cAMP-regulatory protein  35.54 
 
 
198 aa  60.5  0.000000009  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.207531  n/a   
 
 
-
 
NC_008312  Tery_2905  cyclic nucleotide-binding protein  29.32 
 
 
157 aa  60.1  0.000000009  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0600936 
 
 
-
 
NC_014248  Aazo_3761  putative Crp/Fnr family transcriptional regulator  27.97 
 
 
227 aa  60.1  0.00000001  'Nostoc azollae' 0708  Bacteria  normal  0.0509841  n/a   
 
 
-
 
NC_007778  RPB_0380  cyclic nucleotide-binding domain-containing protein  30.37 
 
 
148 aa  60.1  0.00000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01198  cyclic nucleotide-binding protein  31.01 
 
 
229 aa  59.7  0.00000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_1037  cyclic nucleotide-binding protein  29.32 
 
 
227 aa  59.7  0.00000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.272663 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  32.12 
 
 
224 aa  60.1  0.00000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE1298  cyclic nucleotide binding domain-containing protein  25.85 
 
 
177 aa  59.3  0.00000002  Treponema denticola ATCC 35405  Bacteria  hitchhiker  0.000825589  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  27.27 
 
 
228 aa  58.9  0.00000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5417  cyclic nucleotide-binding protein  30 
 
 
419 aa  58.9  0.00000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0881735  normal  0.0681678 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  29.85 
 
 
222 aa  59.3  0.00000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  25.33 
 
 
236 aa  59.3  0.00000002  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  30.34 
 
 
225 aa  59.3  0.00000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>