More than 300 homologs were found in PanDaTox collection
for query gene Shew_1364 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  80.98 
 
 
446 aa  742    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  81.46 
 
 
452 aa  756    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  81.88 
 
 
446 aa  741    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  81.17 
 
 
447 aa  739    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  77.16 
 
 
450 aa  720    Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  81.39 
 
 
447 aa  740    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
447 aa  908    Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  79.87 
 
 
452 aa  741    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  79.91 
 
 
446 aa  724    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  82.06 
 
 
446 aa  743    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  81.61 
 
 
446 aa  739    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  81.17 
 
 
447 aa  739    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  81.17 
 
 
447 aa  738    Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  81.29 
 
 
449 aa  732    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  82.06 
 
 
446 aa  746    Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  78.75 
 
 
446 aa  711    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  65.27 
 
 
446 aa  593  1e-168  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  60.75 
 
 
478 aa  575  1.0000000000000001e-163  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  62.69 
 
 
469 aa  573  1.0000000000000001e-162  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  62.95 
 
 
445 aa  558  1e-158  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  62.98 
 
 
469 aa  557  1e-157  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  62.05 
 
 
447 aa  557  1e-157  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  61.51 
 
 
479 aa  555  1e-157  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  54.6 
 
 
481 aa  482  1e-135  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  55.82 
 
 
470 aa  479  1e-134  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  55.19 
 
 
448 aa  473  1e-132  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  55.17 
 
 
470 aa  470  1.0000000000000001e-131  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  54.04 
 
 
473 aa  466  9.999999999999999e-131  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  56.03 
 
 
451 aa  467  9.999999999999999e-131  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  56.07 
 
 
458 aa  464  1e-129  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  55.11 
 
 
451 aa  459  9.999999999999999e-129  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  55.36 
 
 
451 aa  459  9.999999999999999e-129  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  54.63 
 
 
463 aa  461  9.999999999999999e-129  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl1726  hypothetical protein  51.02 
 
 
437 aa  455  1e-127  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  52.58 
 
 
459 aa  457  1e-127  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1726  hypothetical protein  50.34 
 
 
437 aa  453  1.0000000000000001e-126  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  54 
 
 
471 aa  451  1e-125  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  52.34 
 
 
497 aa  450  1e-125  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  53.55 
 
 
471 aa  446  1.0000000000000001e-124  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  52.9 
 
 
457 aa  444  1e-123  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  50.11 
 
 
473 aa  439  9.999999999999999e-123  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  53.35 
 
 
449 aa  429  1e-119  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  50.22 
 
 
455 aa  409  1e-113  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  47.13 
 
 
469 aa  380  1e-104  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  48.52 
 
 
476 aa  359  7e-98  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  43.82 
 
 
443 aa  345  1e-93  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1156  sigma54 specific transcriptional regulator, Fis family  45.61 
 
 
457 aa  338  9e-92  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00283001 
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  43.12 
 
 
433 aa  331  2e-89  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  42.7 
 
 
444 aa  329  5.0000000000000004e-89  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  40.13 
 
 
478 aa  328  1.0000000000000001e-88  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  44.1 
 
 
451 aa  328  2.0000000000000001e-88  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  40.39 
 
 
457 aa  324  2e-87  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  42.79 
 
 
447 aa  322  6e-87  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  41.94 
 
 
463 aa  322  9.000000000000001e-87  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_013173  Dbac_3302  two component, sigma54 specific, transcriptional regulator, Fis family  39.96 
 
 
469 aa  322  9.999999999999999e-87  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.498619  n/a   
 
 
-
 
NC_007643  Rru_A0540  two component, sigma54 specific, Fis family transcriptional regulator  45.1 
 
 
445 aa  322  9.999999999999999e-87  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0300  two component, sigma54 specific, Fis family transcriptional regulator  44.42 
 
 
457 aa  321  1.9999999999999998e-86  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  39.71 
 
 
490 aa  320  1.9999999999999998e-86  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  48.33 
 
 
433 aa  320  3e-86  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_1016  two component, sigma54 specific, Fis family transcriptional regulator  45.22 
 
 
455 aa  319  5e-86  Caulobacter sp. K31  Bacteria  normal  0.963955  normal 
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  48.48 
 
 
434 aa  319  7.999999999999999e-86  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0682  two component, sigma54 specific, Fis family transcriptional regulator  49.39 
 
 
456 aa  318  1e-85  Maricaulis maris MCS10  Bacteria  normal  0.105475  normal  0.791887 
 
 
-
 
NC_012918  GM21_2062  two component, sigma54 specific, transcriptional regulator, Fis family  42.04 
 
 
449 aa  318  1e-85  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000496565 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  39.38 
 
 
461 aa  317  2e-85  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_009719  Plav_2180  two component, sigma54 specific, Fis family transcriptional regulator  42.59 
 
 
455 aa  317  2e-85  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  39.83 
 
 
472 aa  318  2e-85  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  45.1 
 
 
469 aa  317  3e-85  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  39.38 
 
 
461 aa  317  4e-85  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  40.86 
 
 
456 aa  316  5e-85  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  39.87 
 
 
457 aa  316  5e-85  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  39.67 
 
 
476 aa  316  6e-85  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  39.38 
 
 
461 aa  316  7e-85  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  39.38 
 
 
461 aa  316  7e-85  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  39.38 
 
 
461 aa  316  7e-85  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  39.38 
 
 
461 aa  316  7e-85  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  40.04 
 
 
458 aa  315  8e-85  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1017  two component, sigma54 specific, transcriptional regulator, Fis family  41.24 
 
 
445 aa  315  9.999999999999999e-85  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.246569  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  40.65 
 
 
457 aa  314  1.9999999999999998e-84  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  39.74 
 
 
451 aa  313  3.9999999999999997e-84  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  49.3 
 
 
435 aa  312  5.999999999999999e-84  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0548  two component, sigma54 specific, transcriptional regulator, Fis family  40.04 
 
 
452 aa  311  2e-83  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.902927  normal 
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  47.35 
 
 
436 aa  310  2.9999999999999997e-83  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1461  two component, sigma54 specific, transcriptional regulator, Fis family  44.88 
 
 
459 aa  309  6.999999999999999e-83  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.402822  n/a   
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  40.22 
 
 
461 aa  309  6.999999999999999e-83  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5989  two component, sigma54 specific, transcriptional regulator, Fis family  37.42 
 
 
459 aa  308  9e-83  Haliangium ochraceum DSM 14365  Bacteria  normal  0.999422  normal 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  39.38 
 
 
453 aa  308  1.0000000000000001e-82  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_009483  Gura_4192  two component, sigma-54 specific, Fis family transcriptional regulator  36.19 
 
 
454 aa  308  1.0000000000000001e-82  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00227342  n/a   
 
 
-
 
NC_007958  RPD_3842  two component, sigma54 specific, transcriptional regulator, Fis family  50.91 
 
 
459 aa  308  1.0000000000000001e-82  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0615627  normal 
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  37.08 
 
 
483 aa  308  1.0000000000000001e-82  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_009715  CCV52592_1462  putative alkyl-dihydroxyacetone phosphate synthase  38.79 
 
 
433 aa  308  1.0000000000000001e-82  Campylobacter curvus 525.92  Bacteria  normal  0.836146  n/a   
 
 
-
 
NC_002939  GSU0470  sigma-54 dependent response regulator  41.79 
 
 
453 aa  308  2.0000000000000002e-82  Geobacter sulfurreducens PCA  Bacteria  normal  0.253212  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  40.04 
 
 
454 aa  307  2.0000000000000002e-82  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4389  two component, sigma54 specific, Fis family transcriptional regulator  38.78 
 
 
495 aa  307  3e-82  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.205713  normal  0.107293 
 
 
-
 
NC_007778  RPB_1276  two component, sigma54 specific, Fis family transcriptional regulator  51.07 
 
 
459 aa  307  3e-82  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  39.25 
 
 
462 aa  306  3e-82  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_008609  Ppro_3351  two component, sigma54 specific, Fis family transcriptional regulator  36.6 
 
 
465 aa  306  3e-82  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  37.97 
 
 
456 aa  306  5.0000000000000004e-82  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
NC_009483  Gura_3740  two component, sigma-54 specific, Fis family transcriptional regulator  39.33 
 
 
454 aa  306  5.0000000000000004e-82  Geobacter uraniireducens Rf4  Bacteria  normal  0.0840186  n/a   
 
 
-
 
NC_008062  Bcen_6499  two component, sigma54 specific, Fis family transcriptional regulator  40.77 
 
 
458 aa  306  5.0000000000000004e-82  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6734  two component, sigma54 specific, Fis family transcriptional regulator  40.77 
 
 
458 aa  306  5.0000000000000004e-82  Burkholderia cenocepacia HI2424  Bacteria  normal  0.321079  normal 
 
 
-
 
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