Gene Dret_0548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0548 
Symbol 
ID8418358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp659170 
End bp660528 
Gene Length1359 bp 
Protein Length452 aa 
Translation table11 
GC content57% 
IMG OID645037114 
Producttwo component, sigma54 specific, transcriptional regulator, Fis family 
Protein accessionYP_003197423 
Protein GI258404681 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.902927 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCAC GTATCCTGGT CGTTGATGAC GAACTCGATA TCCGCGTCTC TTTGTCCGGA 
ATTCTTGAAG ATGAAGGGCA CACCGTCATG GAGGCCGACA GCGGCGAAGC CGGGCTGACA
GCGATGGCCG GGAAGGAAAT CGATCTTGTT TTTTTGGATA TCTGGCTGCC GGGCATGGAT
GGGTTGGCTG TACTGGAACG TTTGCGCCAG GAGTGGCCAG ATATTCCCGT GATCATGATT
TCCGGGCACG GCACGATTGA GACTGCGGTC AGCGCGATCA AAAACGGGGC CCACGACTTC
ATCGAAAAAC CGCTTTCTTT GGAAAAAGTG GTCATCACAG CCAACAAGGC CCTGGAATTC
AGCAAACTCA AACGGGAAAA TCGGGATCTG CGTTCACGGG TAAAAACCGA TGTCGTCCAA
GAGATCAGCG GTAGCAGTGG GGCCATCGCC TCCTTGCGCG CCCAGATCGA TCGGGTGGCG
CCCACCGATG CCTGGGTGCT CATCAGCGGC GAGAACGGAA CCGGCAAAGA AATCGTGGCC
CGCTCGCTGC ATGTTAAAAG CCGGCGGGCC AAGCGCCCGA TGATCGCCGT GAACTGTGCG
GCCATCCCCG AAGAACTCAT AGAAAGCGAA CTCTTTGGAC ATGAAAAAGG GGCGTTCACG
GGCGCGGAAC AGGCTCAGCG GGGCAAGTTT GAGTTGGCCC ACAAGGGAAC GCTGTTCCTG
GACGAGATAG GCGACATGAG CCTGAAGACC CAGGCCAAAG TCCTCAGAAT CCTCCAAGAG
CAATCCTTTG AACGGGTCGG AGGGCGAAAG ACCCTCAATG TCGATGTCCG GGTCATTGCC
GCGACAAACA AGGATTTGCC TCAGGAGATC CAGGCTGGCC GGTTCCGCGA GGATCTGTAC
TACCGGCTCA AAGTTTTTCC CCTGGAAGTT CCGCCTTTGC GACTGCGTAT GCAGGATGTC
CCGGATCTGT TGCAGGAGTT TGTAGCGCTT TTGAGCCGGG AGCACGGCTT CAAACCGCTC
TCGTTCACCC CGGAGGCCCT GCGACGGTTA CAGTCCTATA GCTGGCCGGG CAATGTCCGG
GAACTCAAGA ATTTTGTGGA ACGCATGCTG ATTATGTACG CCGGAGACGA GGTTGGTCCG
GAGCACCTTC CCGGCGATGT GGAAGCGCCA ATGGCCGGTG GACATGAACG AGGTGTCGGC
TGGGACGATG ATTTCAAGAA TGCCCGGGCC CGTTTTGAAA AGGATTTTTT GACCCAGAAG
CTCGAACAAT GCGGGGGCAA CGTGGCCCAG ACCGCCGAGC AGGTCGGCCT GGAGCGGAGC
TATTTGTATC GCAAACTCAA AGGCTACGGG CTGATCTGA
 
Protein sequence
MQARILVVDD ELDIRVSLSG ILEDEGHTVM EADSGEAGLT AMAGKEIDLV FLDIWLPGMD 
GLAVLERLRQ EWPDIPVIMI SGHGTIETAV SAIKNGAHDF IEKPLSLEKV VITANKALEF
SKLKRENRDL RSRVKTDVVQ EISGSSGAIA SLRAQIDRVA PTDAWVLISG ENGTGKEIVA
RSLHVKSRRA KRPMIAVNCA AIPEELIESE LFGHEKGAFT GAEQAQRGKF ELAHKGTLFL
DEIGDMSLKT QAKVLRILQE QSFERVGGRK TLNVDVRVIA ATNKDLPQEI QAGRFREDLY
YRLKVFPLEV PPLRLRMQDV PDLLQEFVAL LSREHGFKPL SFTPEALRRL QSYSWPGNVR
ELKNFVERML IMYAGDEVGP EHLPGDVEAP MAGGHERGVG WDDDFKNARA RFEKDFLTQK
LEQCGGNVAQ TAEQVGLERS YLYRKLKGYG LI