| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3068 |
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| Symbol | |
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| ID | 5611796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3704516 |
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| End bp | 3705874 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934005 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001474800 |
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| Protein GI | 157376200 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGAAG GAAAAATACT CTTGGTTGAG GATGACCACT CGCTCAGGGA AGCCCTATTA
GATACGCTAT TACTGGCACA ATATGAATGC ACCGATGTTA GTTCTGCTGA AGAGGCCATC
ATTAAGCTGA AAGGTGAATC ATTCGATATG GTGATAAGCG ATGTGCAGAT GGAGGGGATT
GGAGGCATAG GTTTGCTCAA TTACCTTCAT CAACATACAC AAATACCAGT GCTGTTAATG
ACGGCTTATG CCACCATAGA TAATGCGGTT AATGCGATTA AATTGGGCGC TGTCGATTAT
CTGGCAAAAC CCTTCGCTCC CGAGGTGCTA TTAAACCAGG TTTCTCGTTA TATGAAGCCT
AAACTGGTTC AGGATCAACC CATTGTCGCC GATGACAAGA GTCTTGCGTT ACTCAGTTTA
GCTCAAAAGG TAGCAGCATC CGATGCTTCG GTGATGATTA TGGGACCGAG TGGTTCAGGA
AAAGAGGTGT TGGCGCGCTA TATTCATCAA AACAGCAGTC GTGTCGAGGG TCCGTTTGTG
GCAATTAATT GTGCCGCGAT TCCTGAGAAC ATGCTCGAAG CCACTCTTTT TGGCTATGAG
AAAGGTGCCT TTACCGGTGC CTATCAGGCT TGCCCCGGAA AATTTGAACA GGCGCAGGGA
GGGACTCTGC TGCTGGATGA AATCTCAGAG ATGGAGCTAG GACTACAGGC CAAGCTTTTG
CGTGTACTTC AAGAGCGTGA GGTTGAGCGA CTCGGGGGGC GTAAGAATAT CAAACTGGAT
GTCAGAGTGC TCGCGACGTC GAATCGTGAT CTTAAGTCTC TGGCGAGCTC AGGGGAGTTT
CGTGAGGATC TATATTACCG AATCAATGTC TTTCCACTGA CATGGCCGGC GTTAAATCAA
AGGCCGGCTG ATATCTTGCC GCTAGCCAGA CACTTACTGT TAAGGCACGC CACGTCATCG
GGATTGGCCC AAGTACCTGA GCTCGATGAA AGTGCTTCGA GGCGCTTATT GACACACCGC
TGGCCCGGCA ATGTCAGAGA GTTAGATAAT GTGATCCAAC GAGCATTGAT ACTTCAAAGC
GGCGCGGATA TCGGCGTTAA TGACATCATT ATTGACTCGC AAGATGGGAT ACTTAATCAG
GACAGATCAG ATATCGTGCA AAATATTGAA CCTAAGCCTG CCGAACTCGA TGGGCTCGGG
GATGAGCTAA AGGCCCAAGA GCACGTCATT ATTCTCGAGA CGCTGACTCA ATGTCAGGGA
AGCCGTAAGC TTGTCGCCGA AAAACTGGGG ATAAGTGCCA GAACCCTCAG ATATAAGATG
GCTAAAATGC GGGATATGGG AATACAGATC CCGGCTTAA
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| Protein sequence | MSEGKILLVE DDHSLREALL DTLLLAQYEC TDVSSAEEAI IKLKGESFDM VISDVQMEGI
GGIGLLNYLH QHTQIPVLLM TAYATIDNAV NAIKLGAVDY LAKPFAPEVL LNQVSRYMKP
KLVQDQPIVA DDKSLALLSL AQKVAASDAS VMIMGPSGSG KEVLARYIHQ NSSRVEGPFV
AINCAAIPEN MLEATLFGYE KGAFTGAYQA CPGKFEQAQG GTLLLDEISE MELGLQAKLL
RVLQEREVER LGGRKNIKLD VRVLATSNRD LKSLASSGEF REDLYYRINV FPLTWPALNQ
RPADILPLAR HLLLRHATSS GLAQVPELDE SASRRLLTHR WPGNVRELDN VIQRALILQS
GADIGVNDII IDSQDGILNQ DRSDIVQNIE PKPAELDGLG DELKAQEHVI ILETLTQCQG
SRKLVAEKLG ISARTLRYKM AKMRDMGIQI PA
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