| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0079 |
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| Symbol | |
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| ID | 5613484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 87319 |
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| End bp | 88620 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640930905 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001471820 |
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| Protein GI | 157373220 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.819278 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCTCT CTAATTTCAG ATTAGTCGAT GCAGCACTCG CAGAGCAGTG TGTTGAGCAA
CTCTCTTTGC AAGGCTTTGA GCTTTGGCAA CCGGGCTCCG ACACGCCTTG GATCAGCATG
ATCGATCTAT CCAGCTGTAC CTGTGATGAG TTGGTAAAAA AACTTTCCCT CTACCCGGGT
AAAAATCAGA TCGCACTGCT GGATCCGGAA CAAACTGAGC TGGCAACAAG GGCTATGCAG
CTAGGCGTGC AAGACTACCT ACTGCTCCCT CTCGATGGTG ATCAGGTCAT CTCACTACTG
CAAAGGTTAA GACGGTTAGA GCAACCGGAT ACCGACTTAG TCGTCTCCTC GACGGTGAGC
CGTCAGCTAT TGATGTTAGC CCATAGGGCT GCAACAACCG AAGCCAGTGT ACTGTTAACC
GGTGAGAGCG GTACAGGTAA GGAGCCGATA GCACGTTATA TCCATCAAAA CTCGAACCGC
GCTAATCAGC CCTTTATTGC CGTCAACTGT GCAGCGATCC CCGAGAGCAT TCTTGAGTCA
ATTCTGTTTG GCCATGTCAA AGGCGCATTC ACTGGTGCAT CCAGTGATCA GCCCGGTAAG
TTTGAACTTG CCAATGGAGG AACCTTACTC TTAGATGAGA TCGGTGAAAT GCCTTTTATT
TTGCAATCTA AGCTATTGCG GGTGCTGCAG GAGAGAGAGG TCGAGCGTCT GGGAGGCCAC
AGATCCATCC CTTTGAATAT TCGCGTCATC GCCTCAACGA ATAAGGATCT CCGTAAGGCC
GTTAAGTCCG GCGAATTTAG AGAAGACCTA TTTTATCGTT TAGACGTATT ACCACTGAAA
ATATCTCCCC TGCGTGAACG ACGTGAAGAT ATTCTGCCGT TGGCGGAGCA CTTTCTGCAA
AGGTATAAAC AACTCAGCGA TAACCAGGCT TGTTATTTCA GTGAAGCTGC GCAACAACGC
CTGCTGTCTC ACGATTGGCC TGGCAATGTC AGAGAGCTGG AAAATACCAT TCAACGAGCC
TTAGTCATGC GCAGAGGCCA GGCGTTACAA GCTGCCGAGC TGGGAATTGA ATCGAAAGAG
CATCACGCCA AAGTGAGAGT CGAAAGTTCA GAACAAGGGC TCAAGGCCTC TAAAAGACAA
GCCGAATTCC AGTATATCTT AGATACCCTC AAACGTTTCA ACGGCCACCG AAGTCAAAGC
GCTCAATCTC TGGGTATGAC AACCAGAGCC TTGAGATACA AGCTGGTTCA GATGCGTGAA
GAGGGAATAG ATATCGAACA AGCCTTGGGT CATGCCGCTT AA
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| Protein sequence | MPLSNFRLVD AALAEQCVEQ LSLQGFELWQ PGSDTPWISM IDLSSCTCDE LVKKLSLYPG
KNQIALLDPE QTELATRAMQ LGVQDYLLLP LDGDQVISLL QRLRRLEQPD TDLVVSSTVS
RQLLMLAHRA ATTEASVLLT GESGTGKEPI ARYIHQNSNR ANQPFIAVNC AAIPESILES
ILFGHVKGAF TGASSDQPGK FELANGGTLL LDEIGEMPFI LQSKLLRVLQ EREVERLGGH
RSIPLNIRVI ASTNKDLRKA VKSGEFREDL FYRLDVLPLK ISPLRERRED ILPLAEHFLQ
RYKQLSDNQA CYFSEAAQQR LLSHDWPGNV RELENTIQRA LVMRRGQALQ AAELGIESKE
HHAKVRVESS EQGLKASKRQ AEFQYILDTL KRFNGHRSQS AQSLGMTTRA LRYKLVQMRE
EGIDIEQALG HAA
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