More than 300 homologs were found in PanDaTox collection
for query gene VEA_002813 on replicon NC_013456
Organism: Vibrio sp. Ex25



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  79.21 
 
 
478 aa  772    Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  84.49 
 
 
479 aa  814    Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  100 
 
 
469 aa  955    Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  93.59 
 
 
469 aa  882    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  64.1 
 
 
445 aa  605  9.999999999999999e-173  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  62.82 
 
 
447 aa  604  1.0000000000000001e-171  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  63.89 
 
 
446 aa  596  1e-169  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  63.83 
 
 
446 aa  585  1e-166  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  62.34 
 
 
446 aa  582  1.0000000000000001e-165  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  63.83 
 
 
446 aa  582  1.0000000000000001e-165  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  63.62 
 
 
446 aa  580  1e-164  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  62.47 
 
 
450 aa  579  1e-164  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  61.32 
 
 
446 aa  578  1e-164  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  61.97 
 
 
446 aa  579  1e-164  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  63.4 
 
 
446 aa  579  1e-164  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  62.98 
 
 
447 aa  577  1.0000000000000001e-163  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  62.69 
 
 
452 aa  575  1.0000000000000001e-163  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  62.77 
 
 
447 aa  575  1.0000000000000001e-163  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  62.98 
 
 
447 aa  577  1.0000000000000001e-163  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  62.26 
 
 
452 aa  575  1.0000000000000001e-163  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  62.77 
 
 
447 aa  574  1.0000000000000001e-162  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  62.69 
 
 
447 aa  573  1.0000000000000001e-162  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  62.47 
 
 
449 aa  564  1.0000000000000001e-159  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  57.08 
 
 
470 aa  512  1e-144  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  56.69 
 
 
481 aa  503  1e-141  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  53.63 
 
 
448 aa  489  1e-137  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  55.91 
 
 
463 aa  490  1e-137  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  54.51 
 
 
458 aa  486  1e-136  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  54.86 
 
 
451 aa  479  1e-134  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  54.43 
 
 
451 aa  479  1e-134  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  54.64 
 
 
451 aa  478  1e-133  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  54.18 
 
 
471 aa  473  1e-132  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  52.46 
 
 
459 aa  473  1e-132  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  54.49 
 
 
471 aa  471  1.0000000000000001e-131  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  53.65 
 
 
470 aa  471  1.0000000000000001e-131  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  52.13 
 
 
497 aa  469  1.0000000000000001e-131  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  53.43 
 
 
473 aa  468  9.999999999999999e-131  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_006368  lpp1726  hypothetical protein  50 
 
 
437 aa  452  1.0000000000000001e-126  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  50 
 
 
437 aa  454  1.0000000000000001e-126  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  51.3 
 
 
457 aa  451  1e-125  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  50.75 
 
 
473 aa  444  1e-123  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  50 
 
 
449 aa  436  1e-121  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  50.96 
 
 
455 aa  419  1e-116  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  46.88 
 
 
476 aa  370  1e-101  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  43.13 
 
 
469 aa  358  9.999999999999999e-98  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  42.83 
 
 
443 aa  349  5e-95  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  42.28 
 
 
457 aa  345  8.999999999999999e-94  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  39.83 
 
 
472 aa  345  1e-93  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_007760  Adeh_4240  two component, sigma54 specific, Fis family transcriptional regulator  39.96 
 
 
469 aa  341  2e-92  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  41.56 
 
 
444 aa  338  9.999999999999999e-92  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  41.96 
 
 
463 aa  337  2.9999999999999997e-91  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  40.84 
 
 
456 aa  337  3.9999999999999995e-91  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  42.49 
 
 
458 aa  335  1e-90  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1156  sigma54 specific transcriptional regulator, Fis family  41.67 
 
 
457 aa  331  1e-89  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00283001 
 
 
-
 
NC_012918  GM21_2062  two component, sigma54 specific, transcriptional regulator, Fis family  41.86 
 
 
449 aa  331  1e-89  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000496565 
 
 
-
 
NC_011145  AnaeK_4373  two component, sigma54 specific, transcriptional regulator, Fis family  39.33 
 
 
469 aa  330  2e-89  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4396  two component, sigma54 specific, transcriptional regulator, Fis family  39.33 
 
 
469 aa  330  2e-89  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  38.12 
 
 
463 aa  330  3e-89  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  39.49 
 
 
451 aa  326  5e-88  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  40.17 
 
 
457 aa  326  6e-88  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  45 
 
 
454 aa  325  8.000000000000001e-88  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  40.89 
 
 
447 aa  325  9e-88  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
NC_002939  GSU0470  sigma-54 dependent response regulator  40.43 
 
 
453 aa  325  1e-87  Geobacter sulfurreducens PCA  Bacteria  normal  0.253212  n/a   
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  40.39 
 
 
433 aa  324  2e-87  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_008340  Mlg_0258  two component, sigma54 specific, Fis family transcriptional regulator  38.41 
 
 
451 aa  324  3e-87  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.667822  normal 
 
 
-
 
NC_009675  Anae109_4389  two component, sigma54 specific, Fis family transcriptional regulator  38.28 
 
 
495 aa  323  6e-87  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.205713  normal  0.107293 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  36.23 
 
 
473 aa  322  7e-87  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  39.75 
 
 
458 aa  322  7e-87  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1960  response regulator transcription factor  42.78 
 
 
471 aa  322  9.999999999999999e-87  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  39.67 
 
 
490 aa  321  9.999999999999999e-87  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  36.92 
 
 
473 aa  321  1.9999999999999998e-86  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  43.35 
 
 
457 aa  320  1.9999999999999998e-86  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  36.92 
 
 
473 aa  321  1.9999999999999998e-86  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  40.79 
 
 
476 aa  320  3.9999999999999996e-86  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  44.36 
 
 
457 aa  320  3.9999999999999996e-86  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  42.82 
 
 
470 aa  319  7e-86  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_007519  Dde_1405  two component Fis family transcriptional regulator  41.96 
 
 
477 aa  319  7e-86  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0781313  n/a   
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  42.86 
 
 
387 aa  319  7.999999999999999e-86  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  38.64 
 
 
455 aa  318  1e-85  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  39.23 
 
 
452 aa  318  1e-85  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  40.94 
 
 
447 aa  318  1e-85  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  39.79 
 
 
461 aa  318  1e-85  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1017  two component, sigma54 specific, transcriptional regulator, Fis family  40.94 
 
 
445 aa  318  1e-85  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.246569  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  45.28 
 
 
460 aa  317  2e-85  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  38.25 
 
 
461 aa  318  2e-85  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  38.88 
 
 
457 aa  317  2e-85  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  38.25 
 
 
461 aa  317  3e-85  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  38.25 
 
 
461 aa  317  3e-85  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  38.25 
 
 
461 aa  317  3e-85  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  38.25 
 
 
461 aa  317  3e-85  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  46.84 
 
 
434 aa  317  3e-85  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0300  two component, sigma54 specific, Fis family transcriptional regulator  44.86 
 
 
457 aa  317  3e-85  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  40.17 
 
 
461 aa  317  4e-85  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  39.87 
 
 
451 aa  316  4e-85  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  39.87 
 
 
461 aa  316  4e-85  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  41.51 
 
 
453 aa  316  7e-85  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  38.05 
 
 
461 aa  315  8e-85  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  40.83 
 
 
458 aa  315  9.999999999999999e-85  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  42.12 
 
 
469 aa  315  9.999999999999999e-85  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_008700  Sama_1549  response regulator receiver protein  37.58 
 
 
444 aa  315  9.999999999999999e-85  Shewanella amazonensis SB2B  Bacteria  normal  0.637407  normal 
 
 
-
 
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