More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_1956 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  76.97 
 
 
451 aa  709    Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  77.19 
 
 
451 aa  709    Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  100 
 
 
471 aa  947    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  93.63 
 
 
471 aa  856    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  82.59 
 
 
463 aa  776    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  75.9 
 
 
470 aa  691    Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  77.83 
 
 
451 aa  717    Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  76.37 
 
 
470 aa  719    Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  77.99 
 
 
458 aa  734    Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  75.26 
 
 
473 aa  692    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  59.5 
 
 
481 aa  557  1e-157  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  56.6 
 
 
497 aa  509  1e-143  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  52.95 
 
 
478 aa  491  9.999999999999999e-139  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  54.86 
 
 
448 aa  494  9.999999999999999e-139  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  54.09 
 
 
447 aa  485  1e-136  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  54.49 
 
 
469 aa  482  1e-135  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  53.58 
 
 
445 aa  479  1e-134  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  54.21 
 
 
452 aa  476  1e-133  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  53.88 
 
 
479 aa  476  1e-133  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  56.47 
 
 
447 aa  474  1e-132  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  55.12 
 
 
457 aa  472  1e-132  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  56.49 
 
 
447 aa  473  1e-132  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  54.18 
 
 
469 aa  472  1e-132  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  56.47 
 
 
447 aa  474  1e-132  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  56.25 
 
 
447 aa  472  1e-132  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  55.19 
 
 
446 aa  470  1.0000000000000001e-131  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  54.62 
 
 
446 aa  465  9.999999999999999e-131  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  54.06 
 
 
452 aa  466  9.999999999999999e-131  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  53.35 
 
 
446 aa  466  9.999999999999999e-131  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  54.98 
 
 
446 aa  466  9.999999999999999e-131  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  55.63 
 
 
446 aa  467  9.999999999999999e-131  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  55.87 
 
 
449 aa  466  9.999999999999999e-131  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  54.98 
 
 
446 aa  466  9.999999999999999e-131  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  54.85 
 
 
473 aa  463  1e-129  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  54 
 
 
447 aa  462  1e-129  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  52.17 
 
 
446 aa  464  1e-129  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1726  hypothetical protein  51.95 
 
 
437 aa  462  1e-129  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  51.95 
 
 
437 aa  463  1e-129  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  53.66 
 
 
450 aa  459  9.999999999999999e-129  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  54.86 
 
 
446 aa  457  1e-127  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  50.64 
 
 
459 aa  448  1.0000000000000001e-124  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  50.21 
 
 
449 aa  415  1e-114  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  51.83 
 
 
455 aa  401  9.999999999999999e-111  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  44.14 
 
 
444 aa  362  6e-99  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  44.44 
 
 
443 aa  362  8e-99  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  47.2 
 
 
469 aa  354  2e-96  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  50.92 
 
 
434 aa  352  5.9999999999999994e-96  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  50.6 
 
 
476 aa  351  1e-95  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  49.12 
 
 
433 aa  350  4e-95  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  51.05 
 
 
436 aa  344  2e-93  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  41.6 
 
 
457 aa  343  2.9999999999999997e-93  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  43.06 
 
 
458 aa  343  4e-93  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  47.88 
 
 
469 aa  342  5.999999999999999e-93  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  48.68 
 
 
433 aa  343  5.999999999999999e-93  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  42.76 
 
 
457 aa  342  8e-93  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  40.94 
 
 
461 aa  338  9.999999999999999e-92  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  50.4 
 
 
435 aa  338  9.999999999999999e-92  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  42.29 
 
 
457 aa  337  1.9999999999999998e-91  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  40.94 
 
 
461 aa  337  2.9999999999999997e-91  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  40.94 
 
 
461 aa  337  2.9999999999999997e-91  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  40.94 
 
 
461 aa  337  2.9999999999999997e-91  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  40.94 
 
 
461 aa  337  2.9999999999999997e-91  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_012892  B21_02106  hypothetical protein  40.94 
 
 
461 aa  337  2.9999999999999997e-91  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  44.62 
 
 
453 aa  337  3.9999999999999995e-91  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  43.38 
 
 
447 aa  336  5e-91  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  41.46 
 
 
463 aa  336  5e-91  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_010676  Bphyt_6059  two component, sigma54 specific, transcriptional regulator, Fis family  43.88 
 
 
458 aa  334  2e-90  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0839917 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  39.62 
 
 
470 aa  333  4e-90  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  43.28 
 
 
466 aa  332  6e-90  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  45.03 
 
 
459 aa  331  2e-89  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  40.38 
 
 
473 aa  331  2e-89  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  39.59 
 
 
472 aa  331  2e-89  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  44.76 
 
 
478 aa  330  3e-89  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  39.74 
 
 
480 aa  329  7e-89  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  39.96 
 
 
473 aa  328  1.0000000000000001e-88  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  39.96 
 
 
473 aa  328  1.0000000000000001e-88  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  44.39 
 
 
387 aa  328  2.0000000000000001e-88  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0372  sigma-54 dependent DNA-binding response regulator  40.38 
 
 
461 aa  328  2.0000000000000001e-88  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  46.46 
 
 
452 aa  327  2.0000000000000001e-88  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3302  two component, sigma54 specific, transcriptional regulator, Fis family  42.52 
 
 
472 aa  327  3e-88  Haliangium ochraceum DSM 14365  Bacteria  normal  0.334689  normal  0.605218 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  39.16 
 
 
456 aa  327  3e-88  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  41.31 
 
 
460 aa  327  4.0000000000000003e-88  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  44.47 
 
 
453 aa  326  4.0000000000000003e-88  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  41.34 
 
 
458 aa  326  6e-88  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  46.74 
 
 
461 aa  326  6e-88  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  45.18 
 
 
455 aa  326  6e-88  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  40.66 
 
 
457 aa  326  7e-88  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  39.67 
 
 
462 aa  325  8.000000000000001e-88  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  40.26 
 
 
451 aa  325  1e-87  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  39.79 
 
 
466 aa  325  1e-87  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  40.69 
 
 
441 aa  325  1e-87  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_010465  YPK_0709  sigma-54 dependent trancsriptional regulator  48.31 
 
 
342 aa  325  1e-87  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.821581  n/a   
 
 
-
 
NC_010159  YpAngola_A0236  sigma-54 transcriptional regulatory protein  48.31 
 
 
342 aa  325  1e-87  Yersinia pestis Angola  Bacteria  normal  0.143809  normal  0.138456 
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  39.16 
 
 
461 aa  324  2e-87  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_009483  Gura_0916  two component, sigma-54 specific, Fis family transcriptional regulator  40.8 
 
 
480 aa  324  2e-87  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  40.22 
 
 
454 aa  324  2e-87  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  39.11 
 
 
452 aa  323  4e-87  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  40.26 
 
 
441 aa  323  5e-87  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  42.61 
 
 
451 aa  323  5e-87  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  41.13 
 
 
490 aa  323  6e-87  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
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