More than 300 homologs were found in PanDaTox collection
for query gene Hhal_0500 on replicon NC_008789
Organism: Halorhodospira halophila SL1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
476 aa  944    Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  53.39 
 
 
469 aa  466  9.999999999999999e-131  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  52.04 
 
 
455 aa  411  1e-113  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  51.62 
 
 
481 aa  385  1e-106  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  47.41 
 
 
457 aa  383  1e-105  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  47.63 
 
 
469 aa  385  1e-105  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  44.82 
 
 
447 aa  379  1e-104  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  46 
 
 
478 aa  381  1e-104  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  46.72 
 
 
449 aa  377  1e-103  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  46.23 
 
 
479 aa  374  1e-102  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  46.65 
 
 
497 aa  375  1e-102  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  51.44 
 
 
471 aa  370  1e-101  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  46.67 
 
 
469 aa  370  1e-101  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  49.14 
 
 
450 aa  365  1e-100  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  49.01 
 
 
447 aa  367  1e-100  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  44.4 
 
 
445 aa  367  1e-100  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  48.36 
 
 
448 aa  366  1e-100  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  51.63 
 
 
473 aa  364  2e-99  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  50.62 
 
 
446 aa  363  3e-99  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  51.47 
 
 
471 aa  363  3e-99  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  51.31 
 
 
470 aa  363  3e-99  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  50.12 
 
 
446 aa  362  6e-99  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  50.5 
 
 
446 aa  360  3e-98  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  51.92 
 
 
473 aa  359  6e-98  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  48.52 
 
 
452 aa  358  9.999999999999999e-98  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  48.75 
 
 
446 aa  358  9.999999999999999e-98  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  50.12 
 
 
446 aa  358  9.999999999999999e-98  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  49.5 
 
 
449 aa  358  9.999999999999999e-98  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  50.25 
 
 
446 aa  357  1.9999999999999998e-97  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  50.12 
 
 
446 aa  357  1.9999999999999998e-97  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  49.88 
 
 
447 aa  357  1.9999999999999998e-97  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  51.95 
 
 
458 aa  357  3.9999999999999996e-97  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  49.63 
 
 
447 aa  357  3.9999999999999996e-97  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  51.72 
 
 
463 aa  355  6.999999999999999e-97  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  49.37 
 
 
452 aa  355  7.999999999999999e-97  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  49.38 
 
 
447 aa  355  8.999999999999999e-97  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  49.38 
 
 
447 aa  355  8.999999999999999e-97  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  43.99 
 
 
437 aa  351  1e-95  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp1726  hypothetical protein  43.56 
 
 
437 aa  350  3e-95  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  50.84 
 
 
470 aa  350  3e-95  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  42.62 
 
 
446 aa  349  5e-95  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  48.98 
 
 
451 aa  349  7e-95  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  47.72 
 
 
443 aa  347  2e-94  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  50.49 
 
 
451 aa  345  1e-93  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  50.25 
 
 
451 aa  343  4e-93  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  45.5 
 
 
459 aa  342  1e-92  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  46.95 
 
 
444 aa  342  1e-92  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  47.52 
 
 
434 aa  338  9e-92  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2180  two component, sigma54 specific, Fis family transcriptional regulator  44.37 
 
 
455 aa  330  4e-89  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  45.85 
 
 
433 aa  328  9e-89  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_013889  TK90_1156  sigma54 specific transcriptional regulator, Fis family  44.47 
 
 
457 aa  326  5e-88  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00283001 
 
 
-
 
NC_010338  Caul_1016  two component, sigma54 specific, Fis family transcriptional regulator  48.78 
 
 
455 aa  320  3e-86  Caulobacter sp. K31  Bacteria  normal  0.963955  normal 
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  45.64 
 
 
433 aa  319  6e-86  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  47.21 
 
 
469 aa  318  2e-85  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_011004  Rpal_1461  two component, sigma54 specific, transcriptional regulator, Fis family  50.14 
 
 
459 aa  317  3e-85  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.402822  n/a   
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  46.19 
 
 
435 aa  315  8e-85  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0540  two component, sigma54 specific, Fis family transcriptional regulator  44.18 
 
 
445 aa  313  3.9999999999999997e-84  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0236  sigma-54 transcriptional regulatory protein  48.28 
 
 
342 aa  313  5.999999999999999e-84  Yersinia pestis Angola  Bacteria  normal  0.143809  normal  0.138456 
 
 
-
 
NC_010465  YPK_0709  sigma-54 dependent trancsriptional regulator  48.28 
 
 
342 aa  313  5.999999999999999e-84  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.821581  n/a   
 
 
-
 
NC_008347  Mmar10_0682  two component, sigma54 specific, Fis family transcriptional regulator  49.42 
 
 
456 aa  312  9e-84  Maricaulis maris MCS10  Bacteria  normal  0.105475  normal  0.791887 
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  46.46 
 
 
436 aa  311  2e-83  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1276  two component, sigma54 specific, Fis family transcriptional regulator  49.57 
 
 
459 aa  310  2.9999999999999997e-83  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3842  two component, sigma54 specific, transcriptional regulator, Fis family  49.28 
 
 
459 aa  310  2.9999999999999997e-83  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0615627  normal 
 
 
-
 
NC_009708  YpsIP31758_0629  sigma-54 dependent transcriptional regulator  47.99 
 
 
342 aa  307  2.0000000000000002e-82  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0945  two component, sigma54 specific, Fis family transcriptional regulator  48.46 
 
 
459 aa  306  4.0000000000000004e-82  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.540348  normal 
 
 
-
 
NC_009485  BBta_1872  two component, sigma54 specific, Fis family transcriptional regulator  48.7 
 
 
459 aa  305  1.0000000000000001e-81  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  39.42 
 
 
457 aa  303  4.0000000000000003e-81  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0300  two component, sigma54 specific, Fis family transcriptional regulator  45.15 
 
 
457 aa  302  7.000000000000001e-81  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_3020  two component, sigma54 specific, transcriptional regulator, Fis family  40.79 
 
 
499 aa  302  9e-81  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007406  Nwi_0595  helix-turn-helix, Fis-type  48.55 
 
 
459 aa  301  2e-80  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_1472  two component, sigma54 specific, Fis family transcriptional regulator  41.29 
 
 
451 aa  301  2e-80  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0687  two component, sigma54 specific, Fis family transcriptional regulator  47.97 
 
 
459 aa  301  2e-80  Nitrobacter hamburgensis X14  Bacteria  normal  0.120276  n/a   
 
 
-
 
NC_010511  M446_5122  two component, sigma54 specific, Fis family transcriptional regulator  48.15 
 
 
454 aa  298  1e-79  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0127558 
 
 
-
 
NC_011894  Mnod_6061  two component, sigma54 specific, transcriptional regulator, Fis family  48.16 
 
 
461 aa  298  1e-79  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4088  sigma-54 factor interaction domain-containing protein  47.73 
 
 
457 aa  296  5e-79  Methylobacterium extorquens PA1  Bacteria  hitchhiker  0.0065577  normal  0.672706 
 
 
-
 
NC_011757  Mchl_4456  two component, sigma54 specific, transcriptional regulator, Fis family  47.73 
 
 
457 aa  296  5e-79  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.764911  normal 
 
 
-
 
NC_010725  Mpop_4569  two component, sigma54 specific, transcriptional regulator, Fis family  48 
 
 
456 aa  296  6e-79  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_3302  two component, sigma54 specific, transcriptional regulator, Fis family  42.93 
 
 
469 aa  295  1e-78  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.498619  n/a   
 
 
-
 
NC_011769  DvMF_2149  two component, sigma54 specific, transcriptional regulator, Fis family  39.84 
 
 
477 aa  293  3e-78  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  42.25 
 
 
473 aa  293  4e-78  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  41.09 
 
 
458 aa  291  2e-77  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  42.25 
 
 
473 aa  290  3e-77  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  42.25 
 
 
473 aa  290  3e-77  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  37.74 
 
 
466 aa  288  1e-76  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1405  two component Fis family transcriptional regulator  43.86 
 
 
477 aa  288  1e-76  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0781313  n/a   
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  43.79 
 
 
490 aa  288  2e-76  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3407  two component, sigma54 specific, transcriptional regulator, Fis family  36.66 
 
 
458 aa  287  2.9999999999999996e-76  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_2381  two component, sigma54 specific, transcriptional regulator, Fis family  43.22 
 
 
505 aa  286  5e-76  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5055  two component, sigma54 specific, Fis family transcriptional regulator  49.32 
 
 
453 aa  286  5.999999999999999e-76  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.39623  normal  0.545382 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  38.3 
 
 
451 aa  285  9e-76  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3095  sigma54 specific transcriptional regulator, Fis family  49.85 
 
 
575 aa  285  2.0000000000000002e-75  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.458911 
 
 
-
 
NC_013173  Dbac_1017  two component, sigma54 specific, transcriptional regulator, Fis family  41.5 
 
 
445 aa  284  3.0000000000000004e-75  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.246569  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  42.25 
 
 
470 aa  284  3.0000000000000004e-75  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_002939  GSU2041  sigma-54 dependent DNA-binding response regulator  38.61 
 
 
455 aa  283  5.000000000000001e-75  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0187  two component, sigma54 specific, transcriptional regulator, Fis family  39.09 
 
 
457 aa  283  5.000000000000001e-75  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2533  two component, sigma54 specific, transcriptional regulator, Fis family  40.08 
 
 
483 aa  283  5.000000000000001e-75  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  39.37 
 
 
461 aa  282  7.000000000000001e-75  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  38.95 
 
 
461 aa  281  1e-74  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_007760  Adeh_1326  two component, sigma54 specific, Fis family transcriptional regulator  39.87 
 
 
485 aa  282  1e-74  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1931  two component, sigma54 specific, Fis family transcriptional regulator  40.81 
 
 
477 aa  281  1e-74  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.00933111  normal  0.149931 
 
 
-
 
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