More than 300 homologs were found in PanDaTox collection
for query gene PP_4371 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  100 
 
 
451 aa  899    Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  97.78 
 
 
451 aa  880    Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  77.19 
 
 
471 aa  699    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  76.48 
 
 
471 aa  692    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  75 
 
 
470 aa  682    Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  79.18 
 
 
463 aa  713    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  88.74 
 
 
458 aa  805    Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  98.67 
 
 
451 aa  890    Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  74.57 
 
 
470 aa  668    Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  74.95 
 
 
473 aa  674    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  61.39 
 
 
481 aa  559  1e-158  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  55.46 
 
 
497 aa  513  1e-144  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  58.47 
 
 
445 aa  508  1e-143  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  57.88 
 
 
447 aa  500  1e-140  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  56.7 
 
 
448 aa  497  1e-139  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  54.45 
 
 
478 aa  492  9.999999999999999e-139  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  56.36 
 
 
473 aa  478  1e-134  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  54.86 
 
 
469 aa  479  1e-134  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  53.83 
 
 
446 aa  476  1e-133  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  54.82 
 
 
469 aa  472  1e-132  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  58.28 
 
 
447 aa  473  1e-132  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  58.28 
 
 
447 aa  473  1e-132  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  55.85 
 
 
452 aa  473  1e-132  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  56.4 
 
 
446 aa  472  1e-132  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  56.76 
 
 
446 aa  469  1.0000000000000001e-131  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  58.05 
 
 
447 aa  471  1.0000000000000001e-131  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  57.21 
 
 
446 aa  469  1.0000000000000001e-131  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  57.21 
 
 
446 aa  468  1.0000000000000001e-131  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  58.05 
 
 
447 aa  471  1.0000000000000001e-131  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_006368  lpp1726  hypothetical protein  52.71 
 
 
437 aa  466  9.999999999999999e-131  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  52.71 
 
 
437 aa  466  9.999999999999999e-131  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  55.21 
 
 
457 aa  468  9.999999999999999e-131  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  53.29 
 
 
479 aa  466  9.999999999999999e-131  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  57.01 
 
 
446 aa  466  9.999999999999999e-131  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  56.63 
 
 
446 aa  462  1e-129  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  56.63 
 
 
446 aa  463  1e-129  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  56.73 
 
 
449 aa  464  1e-129  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  54.75 
 
 
452 aa  459  9.999999999999999e-129  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  55.11 
 
 
447 aa  459  9.999999999999999e-129  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  54.81 
 
 
450 aa  461  9.999999999999999e-129  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  51.54 
 
 
459 aa  455  1e-127  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  54.85 
 
 
449 aa  426  1e-118  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  53.74 
 
 
455 aa  410  1e-113  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  47.66 
 
 
444 aa  377  1e-103  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  47.43 
 
 
443 aa  374  1e-102  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  52.7 
 
 
469 aa  363  5.0000000000000005e-99  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  54.25 
 
 
434 aa  358  9e-98  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  48 
 
 
469 aa  357  1.9999999999999998e-97  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  42.09 
 
 
461 aa  350  4e-95  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  42.09 
 
 
461 aa  349  6e-95  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  42.98 
 
 
478 aa  349  7e-95  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  42.09 
 
 
461 aa  348  8e-95  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  42.09 
 
 
461 aa  348  8e-95  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  42.09 
 
 
461 aa  348  8e-95  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  42.64 
 
 
457 aa  348  8e-95  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0916  two component, sigma-54 specific, Fis family transcriptional regulator  42.49 
 
 
480 aa  348  8e-95  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  42.09 
 
 
461 aa  348  8e-95  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  50.27 
 
 
433 aa  347  2e-94  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  44.22 
 
 
464 aa  346  6e-94  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  52.07 
 
 
436 aa  346  6e-94  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  52.47 
 
 
433 aa  345  1e-93  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  44 
 
 
464 aa  342  5e-93  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  40.51 
 
 
480 aa  342  5e-93  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  42.55 
 
 
472 aa  341  1e-92  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  44.25 
 
 
463 aa  341  1e-92  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  44.22 
 
 
463 aa  341  1e-92  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  46.64 
 
 
447 aa  342  1e-92  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  42.54 
 
 
466 aa  341  2e-92  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_011146  Gbem_2805  two component, sigma54 specific, transcriptional regulator, Fis family  40.98 
 
 
478 aa  341  2e-92  Geobacter bemidjiensis Bem  Bacteria  normal  0.228775  n/a   
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  40.8 
 
 
459 aa  341  2e-92  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  50.25 
 
 
476 aa  340  2.9999999999999998e-92  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1405  two component, sigma54 specific, transcriptional regulator, Fis family  40.98 
 
 
478 aa  339  5.9999999999999996e-92  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000117702 
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  43.93 
 
 
461 aa  339  5.9999999999999996e-92  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  43.61 
 
 
447 aa  338  9.999999999999999e-92  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  51.52 
 
 
435 aa  338  9.999999999999999e-92  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1003  nitrogen regulation protein NR(I)  39.36 
 
 
481 aa  338  1.9999999999999998e-91  Geobacter sulfurreducens PCA  Bacteria  normal  0.158383  n/a   
 
 
-
 
NC_011769  DvMF_1993  two component, sigma54 specific, transcriptional regulator, Fis family  41.56 
 
 
486 aa  337  1.9999999999999998e-91  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  43.05 
 
 
461 aa  337  1.9999999999999998e-91  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_010159  YpAngola_A0236  sigma-54 transcriptional regulatory protein  51.82 
 
 
342 aa  336  5.999999999999999e-91  Yersinia pestis Angola  Bacteria  normal  0.143809  normal  0.138456 
 
 
-
 
NC_010465  YPK_0709  sigma-54 dependent trancsriptional regulator  51.82 
 
 
342 aa  336  5.999999999999999e-91  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.821581  n/a   
 
 
-
 
NC_009675  Anae109_4389  two component, sigma54 specific, Fis family transcriptional regulator  42.32 
 
 
495 aa  336  7e-91  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.205713  normal  0.107293 
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  40.21 
 
 
487 aa  335  7.999999999999999e-91  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  43.28 
 
 
476 aa  335  1e-90  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  42.89 
 
 
451 aa  335  1e-90  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  42.86 
 
 
490 aa  333  3e-90  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1364  two component, sigma54 specific, Fis family transcriptional regulator  40.9 
 
 
485 aa  333  4e-90  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  40.96 
 
 
462 aa  333  4e-90  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  39.56 
 
 
453 aa  333  5e-90  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0732  two component, sigma54 specific, Fis family transcriptional regulator  43.81 
 
 
471 aa  332  6e-90  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.121473  normal 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  42.17 
 
 
458 aa  332  7.000000000000001e-90  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2563  two component, sigma54 specific, Fis family transcriptional regulator  40.51 
 
 
480 aa  332  9e-90  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00247378 
 
 
-
 
NC_008009  Acid345_1588  two component, sigma54 specific, Fis family transcriptional regulator  44.44 
 
 
458 aa  332  1e-89  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.13799 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  41.85 
 
 
456 aa  331  2e-89  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  44.27 
 
 
455 aa  331  2e-89  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_009708  YpsIP31758_0629  sigma-54 dependent transcriptional regulator  51.21 
 
 
342 aa  330  4e-89  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0027  sigma-54 dependent transcriptional regulator/response regulator  41.85 
 
 
455 aa  328  1.0000000000000001e-88  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  41.81 
 
 
454 aa  328  1.0000000000000001e-88  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0922  two component, sigma54 specific, Fis family transcriptional regulator  43.56 
 
 
462 aa  328  1.0000000000000001e-88  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.554455  n/a   
 
 
-
 
NC_011206  Lferr_0029  two component, sigma54 specific, transcriptional regulator, Fis family  41.85 
 
 
455 aa  328  1.0000000000000001e-88  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.59486  normal  0.125276 
 
 
-
 
NC_011891  A2cp1_2398  two component, sigma54 specific, transcriptional regulator, Fis family  41.78 
 
 
469 aa  327  2.0000000000000001e-88  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.313034  n/a   
 
 
-
 
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