| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1322 |
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| Symbol | |
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| ID | 4017494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1542862 |
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| End bp | 1544202 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955319 |
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| Product | sigma-54 factor, interaction region |
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| Protein accession | YP_562331 |
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| Protein GI | 91792680 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAAG CTAAATTATT ATTGGTAGAA GATGATCATG CCCTGCGAGA AGCGCTATTA
GATACCTTGC AGTTGGCACA TTACGATTGC GTTGATGTCG CCTCTGCAGA AGAGGCCATC
ATGGCACTCA AGCAAACCTC ATTTGATATG GTGATAAGTG ATGTGCAAAT GGAGGGGGTA
GGCGGGATAG GCTTGCTTAA ATATTTGCAG CAGTCTCACC CCAAACTACC TGTGCTATTA
ATGACAGCCT ATGCCACCAT AGATAGCGCC GTTAATGCGA TGAAACTGGG TGCTGTGGAT
TATTTAGCCA AACCTTTTGC ACCTGAAGTA TTGCTTAATC AAGTCTCTCG TTATTTGCCA
TTAAAGCATG ATAGCCAGCA GCCAGTGGTT GCCGATGAAA AAAGTCATGC CTTGTTAGCC
TTGGCACAGC GGGTGGCGAT ATCGGATGCG TCAGTGATGA TAATGGGCCC CAGTGGTTCA
GGAAAAGAAG TGCTTGCCCG ATACATTCAC CAGCATAGTT CCCGTAGTGA TGAGCCGTTT
GTGGCCATAA ACTGCGCAGC CATTCCAGAG AACATGTTAG AGGCAACCTT GTTTGGCTAT
GAGAAAGGGG CCTTTACTGG CGCTTACCAG GCTTGTCCTG GTAAGTTCGA GCAAGCCCAA
GGCGGTACCT TGTTGTTGGA TGAAATTTCT GAAATGGAAT TAGGCCTGCA GGCTAAATTA
TTGCGAGTCT TGCAGGAAAA AGAAGTTGAA CGTTTGGGCG GCCGTAAGAC GATAAAACTC
AATGTCCGAG TATTGGCAAC CTCGAATCGC GATCTAAAAG CAATGGCATC ATCCGGTGCA
TTCAGGGAGG ATTTATATTA CCGTATTAAT GTATTCCCAT TAGTTTGGCC TGCGCTTAAT
CAAAGGCCTG CAGACATCCT ACCTTTAGCC AGACATTTGA TCCAAAAGCA TGCGCCCAGC
ACCGCAGCTG TGCCAGAGCT TGATGAAAAC GCCACTAGAC GCTTGTTAGC CCATAGATGG
CCTGGCAATG TACGCGAATT AGATAATGTT ATTCAACGGG CGATGATCCT CCATTGCGGC
GATAAAATTG GCCTTGATGA CATCATTCTT GATTCAGGGG ATATGTGCCT GAGCAGTGAT
GCCAACATGG CCCTAAAAAC AGTGGAAGTA GAAGGGTTAG GCGATGAGTT AAAAGCACAA
GAACACGTGA TCATTCTCGA GACGTTAACT CAATGTAATG GTAGCCGTAA AGATGTGGCT
GAACGCTTAG GCATAAGTGC TCGCACCTTA AGGTACAAGA TGGCTAAAAT GAGAGACATG
GGCATAGAGC TGCCAGCTTA G
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| Protein sequence | MSEAKLLLVE DDHALREALL DTLQLAHYDC VDVASAEEAI MALKQTSFDM VISDVQMEGV
GGIGLLKYLQ QSHPKLPVLL MTAYATIDSA VNAMKLGAVD YLAKPFAPEV LLNQVSRYLP
LKHDSQQPVV ADEKSHALLA LAQRVAISDA SVMIMGPSGS GKEVLARYIH QHSSRSDEPF
VAINCAAIPE NMLEATLFGY EKGAFTGAYQ ACPGKFEQAQ GGTLLLDEIS EMELGLQAKL
LRVLQEKEVE RLGGRKTIKL NVRVLATSNR DLKAMASSGA FREDLYYRIN VFPLVWPALN
QRPADILPLA RHLIQKHAPS TAAVPELDEN ATRRLLAHRW PGNVRELDNV IQRAMILHCG
DKIGLDDIIL DSGDMCLSSD ANMALKTVEV EGLGDELKAQ EHVIILETLT QCNGSRKDVA
ERLGISARTL RYKMAKMRDM GIELPA
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