More than 300 homologs were found in PanDaTox collection
for query gene Sfri_1180 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  80.84 
 
 
452 aa  745    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  83.07 
 
 
446 aa  764    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  77.95 
 
 
446 aa  713    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  83.74 
 
 
447 aa  759    Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  81.29 
 
 
447 aa  749    Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  83.74 
 
 
447 aa  759    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  83.52 
 
 
447 aa  758    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  81.37 
 
 
450 aa  759    Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  83.3 
 
 
446 aa  756    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  78.54 
 
 
452 aa  731    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  81.51 
 
 
446 aa  751    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  83.04 
 
 
446 aa  762    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  83.04 
 
 
446 aa  759    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  100 
 
 
449 aa  918    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  83.52 
 
 
447 aa  758    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  83.04 
 
 
446 aa  760    Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  65.2 
 
 
446 aa  582  1.0000000000000001e-165  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  62.47 
 
 
469 aa  578  1e-164  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  61.17 
 
 
478 aa  575  1.0000000000000001e-163  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  62.55 
 
 
469 aa  564  1.0000000000000001e-159  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  62.22 
 
 
445 aa  561  1.0000000000000001e-159  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  61.51 
 
 
479 aa  559  1e-158  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  61.37 
 
 
447 aa  552  1e-156  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  55.35 
 
 
481 aa  493  9.999999999999999e-139  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  56.98 
 
 
448 aa  483  1e-135  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  55.7 
 
 
470 aa  478  1e-134  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  56.64 
 
 
458 aa  476  1e-133  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  56.28 
 
 
451 aa  472  1e-132  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  56.73 
 
 
451 aa  473  1e-132  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  56.86 
 
 
463 aa  472  1e-132  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  56.13 
 
 
470 aa  472  1e-132  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  56.5 
 
 
451 aa  469  1.0000000000000001e-131  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  55.82 
 
 
471 aa  466  9.999999999999999e-131  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  55.34 
 
 
473 aa  467  9.999999999999999e-131  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  55.87 
 
 
471 aa  460  9.999999999999999e-129  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_006368  lpp1726  hypothetical protein  51.69 
 
 
437 aa  455  1e-127  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  52.49 
 
 
459 aa  457  1e-127  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  51.47 
 
 
437 aa  452  1.0000000000000001e-126  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  51.56 
 
 
497 aa  453  1.0000000000000001e-126  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  52.85 
 
 
457 aa  446  1.0000000000000001e-124  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  51.61 
 
 
473 aa  442  1e-123  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  51.67 
 
 
449 aa  427  1e-118  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  50.22 
 
 
455 aa  410  1e-113  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  45.63 
 
 
469 aa  371  1e-101  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  48.51 
 
 
476 aa  350  3e-95  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  45.11 
 
 
443 aa  349  6e-95  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  43.89 
 
 
444 aa  339  7e-92  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  40.43 
 
 
472 aa  333  4e-90  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_013889  TK90_1156  sigma54 specific transcriptional regulator, Fis family  42.8 
 
 
457 aa  328  1.0000000000000001e-88  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00283001 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  40.74 
 
 
457 aa  325  8.000000000000001e-88  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  43.19 
 
 
433 aa  325  8.000000000000001e-88  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  40.48 
 
 
463 aa  324  2e-87  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  39.87 
 
 
478 aa  322  8e-87  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  41.54 
 
 
458 aa  321  9.999999999999999e-87  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  49.3 
 
 
434 aa  321  9.999999999999999e-87  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2062  two component, sigma54 specific, transcriptional regulator, Fis family  41.81 
 
 
449 aa  320  3e-86  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000496565 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  42.09 
 
 
461 aa  320  3e-86  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  40.52 
 
 
462 aa  320  3e-86  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  48.32 
 
 
433 aa  320  3.9999999999999996e-86  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2180  two component, sigma54 specific, Fis family transcriptional regulator  43.6 
 
 
455 aa  319  5e-86  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  42.09 
 
 
461 aa  319  6e-86  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  42.09 
 
 
461 aa  319  6e-86  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  42.09 
 
 
461 aa  319  6e-86  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  42.09 
 
 
461 aa  319  6e-86  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  42.09 
 
 
461 aa  319  6e-86  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_002939  GSU0470  sigma-54 dependent response regulator  42.22 
 
 
453 aa  319  7e-86  Geobacter sulfurreducens PCA  Bacteria  normal  0.253212  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  41.05 
 
 
457 aa  319  7.999999999999999e-86  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  40.75 
 
 
447 aa  318  2e-85  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
NC_008576  Mmc1_0300  two component, sigma54 specific, Fis family transcriptional regulator  46.67 
 
 
457 aa  316  5e-85  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  40.61 
 
 
457 aa  315  7e-85  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  40.87 
 
 
458 aa  315  9.999999999999999e-85  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  44.96 
 
 
469 aa  315  9.999999999999999e-85  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  40.76 
 
 
453 aa  314  1.9999999999999998e-84  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  39.69 
 
 
492 aa  313  3.9999999999999997e-84  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0682  two component, sigma54 specific, Fis family transcriptional regulator  49.39 
 
 
456 aa  313  3.9999999999999997e-84  Maricaulis maris MCS10  Bacteria  normal  0.105475  normal  0.791887 
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  48.32 
 
 
436 aa  313  3.9999999999999997e-84  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  40.8 
 
 
454 aa  311  2e-83  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  38.24 
 
 
460 aa  311  2e-83  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  41.46 
 
 
451 aa  310  2.9999999999999997e-83  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2341  two component, sigma54 specific, Fis family transcriptional regulator  40.13 
 
 
450 aa  310  4e-83  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  40.7 
 
 
490 aa  310  4e-83  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  40.79 
 
 
461 aa  310  5e-83  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5989  two component, sigma54 specific, transcriptional regulator, Fis family  37.8 
 
 
459 aa  309  6.999999999999999e-83  Haliangium ochraceum DSM 14365  Bacteria  normal  0.999422  normal 
 
 
-
 
NC_008609  Ppro_3351  two component, sigma54 specific, Fis family transcriptional regulator  38.41 
 
 
465 aa  309  6.999999999999999e-83  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  39.08 
 
 
458 aa  309  8e-83  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  39.17 
 
 
476 aa  308  9e-83  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0214  two component, sigma54 specific, Fis family transcriptional regulator  40.13 
 
 
455 aa  308  1.0000000000000001e-82  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.662344 
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  40.66 
 
 
447 aa  307  2.0000000000000002e-82  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_009675  Anae109_4389  two component, sigma54 specific, Fis family transcriptional regulator  38.65 
 
 
495 aa  307  2.0000000000000002e-82  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.205713  normal  0.107293 
 
 
-
 
NC_007954  Sden_1366  sigma-54 factor, interaction region  39.69 
 
 
469 aa  306  3e-82  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  39.91 
 
 
456 aa  306  4.0000000000000004e-82  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  37.95 
 
 
455 aa  306  5.0000000000000004e-82  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  37.17 
 
 
452 aa  305  8.000000000000001e-82  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1756  two component, sigma54 specific, Fis family transcriptional regulator  39.78 
 
 
450 aa  305  1.0000000000000001e-81  Shewanella pealeana ATCC 700345  Bacteria  normal  0.562134  n/a   
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  36.76 
 
 
456 aa  305  1.0000000000000001e-81  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_3302  two component, sigma54 specific, transcriptional regulator, Fis family  40.4 
 
 
469 aa  305  1.0000000000000001e-81  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.498619  n/a   
 
 
-
 
NC_009831  Ssed_1798  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
450 aa  305  1.0000000000000001e-81  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  39.91 
 
 
459 aa  305  1.0000000000000001e-81  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  46.7 
 
 
435 aa  304  2.0000000000000002e-81  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2160  two component, sigma54 specific, transcriptional regulator, Fis family  41.09 
 
 
449 aa  304  2.0000000000000002e-81  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>