More than 300 homologs were found in PanDaTox collection
for query gene Pmen_4419 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
469 aa  942    Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  55.12 
 
 
433 aa  390  1e-107  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  56.79 
 
 
436 aa  388  1e-107  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  52.83 
 
 
444 aa  384  1e-105  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  55.68 
 
 
433 aa  385  1e-105  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  52.56 
 
 
443 aa  384  1e-105  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  53.3 
 
 
435 aa  381  1e-104  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  54.02 
 
 
434 aa  372  1e-102  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0709  sigma-54 dependent trancsriptional regulator  54.35 
 
 
342 aa  357  2.9999999999999997e-97  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.821581  n/a   
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  48 
 
 
451 aa  357  2.9999999999999997e-97  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  48 
 
 
451 aa  357  2.9999999999999997e-97  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_010159  YpAngola_A0236  sigma-54 transcriptional regulatory protein  54.35 
 
 
342 aa  357  2.9999999999999997e-97  Yersinia pestis Angola  Bacteria  normal  0.143809  normal  0.138456 
 
 
-
 
NC_009708  YpsIP31758_0629  sigma-54 dependent transcriptional regulator  54.05 
 
 
342 aa  355  1e-96  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  47.83 
 
 
470 aa  353  2.9999999999999997e-96  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  46.14 
 
 
458 aa  353  4e-96  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  49.26 
 
 
451 aa  353  4e-96  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  48.41 
 
 
471 aa  343  4e-93  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  42.06 
 
 
497 aa  343  5e-93  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  47.88 
 
 
471 aa  342  7e-93  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  46.86 
 
 
463 aa  341  2e-92  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  45.65 
 
 
473 aa  339  5e-92  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  42.29 
 
 
481 aa  338  9.999999999999999e-92  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0248  lateral flagellar RpoN-interacting regulatory protein LafK  52.88 
 
 
328 aa  337  3.9999999999999995e-91  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  45.52 
 
 
470 aa  336  5e-91  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_010468  EcolC_3384  putative sigma54 specific transcriptional regulator  52.88 
 
 
328 aa  335  1e-90  Escherichia coli ATCC 8739  Bacteria  normal  0.399889  normal 
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  39.7 
 
 
459 aa  328  1.0000000000000001e-88  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  44.42 
 
 
449 aa  327  3e-88  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  46.4 
 
 
446 aa  327  3e-88  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  45.04 
 
 
473 aa  324  2e-87  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  45.98 
 
 
457 aa  323  4e-87  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  46.48 
 
 
450 aa  323  5e-87  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  47.23 
 
 
446 aa  321  1.9999999999999998e-86  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  43.91 
 
 
478 aa  320  3e-86  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  44.73 
 
 
469 aa  320  3e-86  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  46.7 
 
 
446 aa  319  5e-86  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  46.63 
 
 
446 aa  319  7e-86  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  45.48 
 
 
447 aa  318  1e-85  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  44.39 
 
 
448 aa  317  2e-85  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  45.1 
 
 
447 aa  317  3e-85  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_006369  lpl1726  hypothetical protein  43.69 
 
 
437 aa  316  5e-85  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp1726  hypothetical protein  43.69 
 
 
437 aa  316  6e-85  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  44.59 
 
 
452 aa  316  6e-85  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  46.17 
 
 
446 aa  315  8e-85  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  42.12 
 
 
469 aa  315  9.999999999999999e-85  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  46.21 
 
 
446 aa  314  1.9999999999999998e-84  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  46.44 
 
 
446 aa  314  1.9999999999999998e-84  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  45.77 
 
 
449 aa  315  1.9999999999999998e-84  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  43.91 
 
 
445 aa  313  4.999999999999999e-84  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  49.17 
 
 
455 aa  312  9e-84  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  45.94 
 
 
476 aa  307  3e-82  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  45.36 
 
 
452 aa  307  3e-82  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  40.54 
 
 
479 aa  307  3e-82  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  46.17 
 
 
447 aa  306  4.0000000000000004e-82  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  46.17 
 
 
447 aa  306  5.0000000000000004e-82  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  43.99 
 
 
469 aa  306  6e-82  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  45.91 
 
 
447 aa  305  1.0000000000000001e-81  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  45.91 
 
 
447 aa  305  1.0000000000000001e-81  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  37.67 
 
 
446 aa  296  5e-79  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_3302  two component, sigma54 specific, transcriptional regulator, Fis family  40.93 
 
 
469 aa  296  5e-79  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.498619  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  37.75 
 
 
452 aa  293  5e-78  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0300  two component, sigma54 specific, Fis family transcriptional regulator  44.63 
 
 
457 aa  293  6e-78  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  45.04 
 
 
447 aa  292  7e-78  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
NC_008751  Dvul_1931  two component, sigma54 specific, Fis family transcriptional regulator  41.87 
 
 
477 aa  292  8e-78  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.00933111  normal  0.149931 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  39.57 
 
 
457 aa  292  9e-78  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_1157  transcriptional regulator, NifA subfamily, Fis Family  44.05 
 
 
502 aa  288  1e-76  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1472  two component, sigma54 specific, Fis family transcriptional regulator  43.99 
 
 
451 aa  288  1e-76  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  40.74 
 
 
458 aa  288  2e-76  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  38.66 
 
 
470 aa  288  2e-76  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_013889  TK90_1156  sigma54 specific transcriptional regulator, Fis family  40.64 
 
 
457 aa  286  4e-76  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00283001 
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  42.04 
 
 
461 aa  286  5.999999999999999e-76  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  42.04 
 
 
461 aa  286  5.999999999999999e-76  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  36.7 
 
 
452 aa  286  8e-76  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  42.04 
 
 
461 aa  285  1.0000000000000001e-75  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  42.04 
 
 
461 aa  285  1.0000000000000001e-75  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  42.04 
 
 
461 aa  285  1.0000000000000001e-75  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  42.04 
 
 
461 aa  285  1.0000000000000001e-75  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  39.95 
 
 
454 aa  285  2.0000000000000002e-75  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  43.3 
 
 
463 aa  284  2.0000000000000002e-75  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_012918  GM21_2062  two component, sigma54 specific, transcriptional regulator, Fis family  44.68 
 
 
449 aa  284  3.0000000000000004e-75  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000496565 
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  44.13 
 
 
451 aa  284  3.0000000000000004e-75  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0339  sigma-54 dependent trancsriptional regulator  48.5 
 
 
459 aa  283  4.0000000000000003e-75  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000000000000360791  unclonable  4.1095600000000004e-23 
 
 
-
 
NC_007519  Dde_1405  two component Fis family transcriptional regulator  43.73 
 
 
477 aa  283  4.0000000000000003e-75  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0781313  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  42.22 
 
 
457 aa  283  5.000000000000001e-75  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_0850  two component Fis family transcriptional regulator  42.56 
 
 
462 aa  281  2e-74  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  41.23 
 
 
490 aa  280  4e-74  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  37.28 
 
 
454 aa  278  1e-73  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  42.27 
 
 
464 aa  278  2e-73  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_011145  AnaeK_4383  two component, sigma54 specific, transcriptional regulator, Fis family  41.97 
 
 
483 aa  278  2e-73  Anaeromyxobacter sp. K  Bacteria  normal  0.246116  n/a   
 
 
-
 
NC_011891  A2cp1_4406  two component, sigma54 specific, transcriptional regulator, Fis family  41.97 
 
 
483 aa  277  2e-73  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.378923  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  37.31 
 
 
473 aa  278  2e-73  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  42.27 
 
 
464 aa  277  2e-73  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0976  two component, sigma54 specific, transcriptional regulator, Fis family  42.05 
 
 
442 aa  278  2e-73  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00434157  normal  0.514512 
 
 
-
 
NC_011769  DvMF_3020  two component, sigma54 specific, transcriptional regulator, Fis family  39.81 
 
 
499 aa  277  3e-73  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  37.68 
 
 
473 aa  277  3e-73  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_011138  MADE_03284  sigma-54 dependent DNA-binding response regulator, Fis family protein  41.33 
 
 
453 aa  277  3e-73  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2207  transcriptional regulator, NifA subfamily, Fis Family  45.03 
 
 
539 aa  277  3e-73  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  37.68 
 
 
473 aa  277  3e-73  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_010338  Caul_1016  two component, sigma54 specific, Fis family transcriptional regulator  47.47 
 
 
455 aa  276  5e-73  Caulobacter sp. K31  Bacteria  normal  0.963955  normal 
 
 
-
 
NC_012918  GM21_3475  two component, sigma54 specific, transcriptional regulator, Fis family  39.11 
 
 
453 aa  276  6e-73  Geobacter sp. M21  Bacteria  n/a    normal  0.0804749 
 
 
-
 
NC_007643  Rru_A0540  two component, sigma54 specific, Fis family transcriptional regulator  42.67 
 
 
445 aa  276  8e-73  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
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