More than 300 homologs were found in PanDaTox collection
for query gene Sputcn32_2578 on replicon NC_009438
Organism: Shewanella putrefaciens CN-32



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
446 aa  904    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  79.91 
 
 
452 aa  731    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  90.6 
 
 
447 aa  824    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  90.6 
 
 
447 aa  824    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  90.83 
 
 
447 aa  825    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  91.26 
 
 
446 aa  828    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  78.89 
 
 
450 aa  726    Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  90.6 
 
 
447 aa  823    Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  79.46 
 
 
446 aa  730    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  78.98 
 
 
452 aa  733    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  92.17 
 
 
446 aa  833    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  91.48 
 
 
446 aa  831    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  81.51 
 
 
449 aa  734    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  80.98 
 
 
447 aa  742    Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  91.26 
 
 
446 aa  830    Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  78.52 
 
 
446 aa  716    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  64.88 
 
 
446 aa  587  1e-166  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  62.34 
 
 
469 aa  582  1.0000000000000001e-165  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  61.8 
 
 
479 aa  573  1.0000000000000001e-162  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  62.69 
 
 
447 aa  568  1e-161  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  60.96 
 
 
478 aa  571  1e-161  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  60.85 
 
 
469 aa  562  1.0000000000000001e-159  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  62.86 
 
 
445 aa  560  1e-158  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  57.43 
 
 
448 aa  495  1e-139  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  55.67 
 
 
481 aa  496  1e-139  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  57.02 
 
 
470 aa  488  1e-136  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  55.72 
 
 
470 aa  470  1.0000000000000001e-131  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  56.04 
 
 
463 aa  471  1.0000000000000001e-131  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  54.72 
 
 
473 aa  469  1.0000000000000001e-131  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  57.17 
 
 
458 aa  471  1.0000000000000001e-131  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  57.08 
 
 
451 aa  466  9.999999999999999e-131  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  56.63 
 
 
451 aa  462  1e-129  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_006368  lpp1726  hypothetical protein  52.73 
 
 
437 aa  462  1e-129  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  52.73 
 
 
437 aa  462  1e-129  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  55.19 
 
 
471 aa  460  9.999999999999999e-129  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  56.73 
 
 
451 aa  460  9.999999999999999e-129  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  52.22 
 
 
497 aa  458  9.999999999999999e-129  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  55.41 
 
 
471 aa  456  1e-127  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  50.33 
 
 
459 aa  447  1.0000000000000001e-124  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  51.91 
 
 
473 aa  439  9.999999999999999e-123  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  51.56 
 
 
457 aa  432  1e-120  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  51.87 
 
 
455 aa  422  1e-117  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  52.46 
 
 
449 aa  419  1e-116  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  47.03 
 
 
469 aa  375  1e-102  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  49.88 
 
 
476 aa  358  1.9999999999999998e-97  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  44.1 
 
 
443 aa  348  1e-94  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  43.36 
 
 
444 aa  338  9.999999999999999e-92  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013889  TK90_1156  sigma54 specific transcriptional regulator, Fis family  44.09 
 
 
457 aa  333  4e-90  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00283001 
 
 
-
 
NC_012918  GM21_2062  two component, sigma54 specific, transcriptional regulator, Fis family  44.91 
 
 
449 aa  333  5e-90  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000496565 
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  41.25 
 
 
472 aa  328  8e-89  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  50.99 
 
 
434 aa  327  2.0000000000000001e-88  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  42.89 
 
 
458 aa  325  7e-88  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  43.69 
 
 
433 aa  325  9e-88  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  41.52 
 
 
461 aa  325  1e-87  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  43.24 
 
 
451 aa  325  1e-87  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  41.52 
 
 
461 aa  325  1e-87  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  43.97 
 
 
447 aa  324  2e-87  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  41.52 
 
 
461 aa  323  3e-87  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  41.52 
 
 
461 aa  323  3e-87  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  41.52 
 
 
461 aa  323  3e-87  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  41.52 
 
 
461 aa  323  3e-87  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  48.75 
 
 
433 aa  323  5e-87  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0300  two component, sigma54 specific, Fis family transcriptional regulator  45.23 
 
 
457 aa  321  9.999999999999999e-87  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1017  two component, sigma54 specific, transcriptional regulator, Fis family  42.22 
 
 
445 aa  321  1.9999999999999998e-86  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.246569  n/a   
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
476 aa  321  1.9999999999999998e-86  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  41.5 
 
 
462 aa  321  1.9999999999999998e-86  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  50.14 
 
 
435 aa  320  3e-86  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  49.86 
 
 
436 aa  320  3.9999999999999996e-86  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  40.56 
 
 
478 aa  318  1e-85  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2160  two component, sigma54 specific, transcriptional regulator, Fis family  43.82 
 
 
449 aa  316  5e-85  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  41 
 
 
457 aa  316  5e-85  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  41.05 
 
 
457 aa  315  9e-85  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  41.54 
 
 
463 aa  315  9.999999999999999e-85  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  38.83 
 
 
463 aa  315  9.999999999999999e-85  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  46.21 
 
 
469 aa  314  1.9999999999999998e-84  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  39.31 
 
 
455 aa  314  1.9999999999999998e-84  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  39.1 
 
 
466 aa  314  1.9999999999999998e-84  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0470  sigma-54 dependent response regulator  42.42 
 
 
453 aa  313  2.9999999999999996e-84  Geobacter sulfurreducens PCA  Bacteria  normal  0.253212  n/a   
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  40.35 
 
 
456 aa  313  2.9999999999999996e-84  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  40.52 
 
 
451 aa  313  2.9999999999999996e-84  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0214  two component, sigma54 specific, Fis family transcriptional regulator  40.99 
 
 
455 aa  313  3.9999999999999997e-84  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.662344 
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  39.12 
 
 
458 aa  313  4.999999999999999e-84  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0790  two component, sigma54 specific, transcriptional regulator, Fis family  39.91 
 
 
466 aa  312  5.999999999999999e-84  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  40.98 
 
 
454 aa  312  5.999999999999999e-84  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  42.18 
 
 
490 aa  312  7.999999999999999e-84  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  40.09 
 
 
453 aa  311  1e-83  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_009675  Anae109_4389  two component, sigma54 specific, Fis family transcriptional regulator  37.58 
 
 
495 aa  311  2e-83  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.205713  normal  0.107293 
 
 
-
 
NC_008347  Mmar10_0682  two component, sigma54 specific, Fis family transcriptional regulator  47.01 
 
 
456 aa  311  2e-83  Maricaulis maris MCS10  Bacteria  normal  0.105475  normal  0.791887 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  41.23 
 
 
457 aa  310  5e-83  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  38.84 
 
 
452 aa  310  5e-83  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  38.86 
 
 
456 aa  310  5e-83  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  42.78 
 
 
387 aa  309  8e-83  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2180  two component, sigma54 specific, Fis family transcriptional regulator  43.22 
 
 
455 aa  308  1.0000000000000001e-82  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1994  two component signal transduction response regulator  39.53 
 
 
477 aa  308  2.0000000000000002e-82  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  39.87 
 
 
452 aa  307  2.0000000000000002e-82  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  41.72 
 
 
456 aa  308  2.0000000000000002e-82  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_009675  Anae109_4152  two component, sigma54 specific, Fis family transcriptional regulator  40.09 
 
 
480 aa  306  3e-82  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.038607 
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  40.67 
 
 
447 aa  307  3e-82  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  39.43 
 
 
492 aa  306  7e-82  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0540  two component, sigma54 specific, Fis family transcriptional regulator  45.36 
 
 
445 aa  305  9.000000000000001e-82  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
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