More than 300 homologs were found in PanDaTox collection
for query gene CPS_1500 on replicon NC_003910
Organism: Colwellia psychrerythraea 34H



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003910  CPS_1500  flagellar regulatory protein C  100 
 
 
446 aa  914    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  66.82 
 
 
445 aa  621  1e-177  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  66.44 
 
 
447 aa  622  1e-177  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  63.6 
 
 
478 aa  612  9.999999999999999e-175  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  65.77 
 
 
446 aa  598  1e-170  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  65.92 
 
 
446 aa  597  1e-170  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  66.67 
 
 
447 aa  595  1e-169  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  66.67 
 
 
447 aa  595  1e-169  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  63.89 
 
 
469 aa  596  1e-169  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  66.67 
 
 
447 aa  595  1e-169  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  66.89 
 
 
447 aa  597  1e-169  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  65.27 
 
 
447 aa  593  1e-168  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  65.7 
 
 
446 aa  593  1e-168  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  65.02 
 
 
446 aa  590  1e-167  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  64.88 
 
 
446 aa  587  1e-166  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  62.69 
 
 
469 aa  579  1e-164  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  63.86 
 
 
450 aa  578  1e-164  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  63.31 
 
 
479 aa  581  1e-164  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  64.21 
 
 
446 aa  579  1e-164  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  64.29 
 
 
446 aa  575  1.0000000000000001e-163  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  65.2 
 
 
449 aa  571  1.0000000000000001e-162  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  63.13 
 
 
452 aa  567  1e-160  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  63.44 
 
 
452 aa  564  1.0000000000000001e-159  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  56.15 
 
 
448 aa  479  1e-134  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  52.94 
 
 
481 aa  479  1e-134  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  53.83 
 
 
451 aa  476  1e-133  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  53.6 
 
 
451 aa  477  1e-133  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  53.6 
 
 
451 aa  472  1e-132  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  52.81 
 
 
470 aa  474  1e-132  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_006369  lpl1726  hypothetical protein  53.32 
 
 
437 aa  469  1.0000000000000001e-131  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp1726  hypothetical protein  53.09 
 
 
437 aa  466  9.999999999999999e-131  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  53.08 
 
 
458 aa  468  9.999999999999999e-131  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  53.41 
 
 
463 aa  464  1e-129  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  50.64 
 
 
497 aa  461  9.999999999999999e-129  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  53.25 
 
 
470 aa  461  9.999999999999999e-129  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  51.61 
 
 
473 aa  456  1e-127  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  52.17 
 
 
471 aa  454  1.0000000000000001e-126  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  50.64 
 
 
459 aa  451  1e-125  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  51.5 
 
 
471 aa  446  1.0000000000000001e-124  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  52.86 
 
 
457 aa  446  1.0000000000000001e-124  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  51.22 
 
 
449 aa  430  1e-119  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  48 
 
 
473 aa  412  1e-114  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  51.1 
 
 
455 aa  413  1e-114  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  43.37 
 
 
469 aa  360  2e-98  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  42.41 
 
 
476 aa  345  1e-93  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  43.74 
 
 
443 aa  338  1.9999999999999998e-91  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2062  two component, sigma54 specific, transcriptional regulator, Fis family  43.11 
 
 
449 aa  337  2.9999999999999997e-91  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000496565 
 
 
-
 
NC_013889  TK90_1156  sigma54 specific transcriptional regulator, Fis family  42.18 
 
 
457 aa  335  1e-90  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00283001 
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  41.94 
 
 
447 aa  335  1e-90  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  43.57 
 
 
444 aa  331  1e-89  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  53.46 
 
 
435 aa  329  6e-89  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  42.38 
 
 
451 aa  327  3e-88  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2160  two component, sigma54 specific, transcriptional regulator, Fis family  43.33 
 
 
449 aa  326  7e-88  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  39.87 
 
 
478 aa  325  8.000000000000001e-88  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  41.06 
 
 
456 aa  325  1e-87  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  40.57 
 
 
461 aa  324  2e-87  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  40.48 
 
 
463 aa  324  2e-87  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  41.15 
 
 
466 aa  322  6e-87  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  40.57 
 
 
461 aa  322  8e-87  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  40.57 
 
 
461 aa  322  8e-87  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  40.57 
 
 
461 aa  322  8e-87  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  40.57 
 
 
461 aa  322  8e-87  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  39.61 
 
 
455 aa  322  8e-87  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  40.31 
 
 
461 aa  322  8e-87  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  47.23 
 
 
433 aa  322  8e-87  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0470  sigma-54 dependent response regulator  41.72 
 
 
453 aa  322  9.999999999999999e-87  Geobacter sulfurreducens PCA  Bacteria  normal  0.253212  n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  38.83 
 
 
458 aa  320  1.9999999999999998e-86  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  40.88 
 
 
458 aa  321  1.9999999999999998e-86  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  48.74 
 
 
434 aa  320  3e-86  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  47.77 
 
 
433 aa  319  7.999999999999999e-86  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  40.94 
 
 
454 aa  318  7.999999999999999e-86  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  40 
 
 
453 aa  318  9e-86  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  39.52 
 
 
462 aa  318  1e-85  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  49.3 
 
 
436 aa  316  6e-85  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  38.99 
 
 
461 aa  315  7e-85  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  40.48 
 
 
457 aa  315  8e-85  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  39.52 
 
 
463 aa  315  9.999999999999999e-85  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  38.71 
 
 
472 aa  314  1.9999999999999998e-84  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_009483  Gura_3415  two component, sigma-54 specific, Fis family transcriptional regulator  41.37 
 
 
453 aa  314  1.9999999999999998e-84  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  41.86 
 
 
387 aa  313  2.9999999999999996e-84  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  40.26 
 
 
452 aa  313  3.9999999999999997e-84  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1685  two component Fis family transcriptional regulator  38.62 
 
 
457 aa  313  4.999999999999999e-84  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00529377  n/a   
 
 
-
 
NC_008751  Dvul_1657  two component, sigma54 specific, Fis family transcriptional regulator  40.22 
 
 
459 aa  313  4.999999999999999e-84  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.000574549  normal  0.302016 
 
 
-
 
NC_009943  Dole_1364  two component, sigma54 specific, Fis family transcriptional regulator  39.36 
 
 
485 aa  312  5.999999999999999e-84  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2713  two component, sigma54 specific, transcriptional regulator, Fis family  39.69 
 
 
454 aa  312  9e-84  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  39.41 
 
 
458 aa  311  1e-83  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  39.2 
 
 
476 aa  311  1e-83  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  39.78 
 
 
451 aa  312  1e-83  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  38.68 
 
 
461 aa  311  2e-83  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  40 
 
 
457 aa  310  4e-83  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_0916  two component, sigma-54 specific, Fis family transcriptional regulator  38.35 
 
 
480 aa  309  5.9999999999999995e-83  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  38.19 
 
 
452 aa  309  6.999999999999999e-83  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_013173  Dbac_1017  two component, sigma54 specific, transcriptional regulator, Fis family  39.78 
 
 
445 aa  309  6.999999999999999e-83  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.246569  n/a   
 
 
-
 
NC_013440  Hoch_2606  two component, sigma54 specific, transcriptional regulator, Fis family  37.94 
 
 
501 aa  309  8e-83  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.955687 
 
 
-
 
NC_013223  Dret_0548  two component, sigma54 specific, transcriptional regulator, Fis family  38.24 
 
 
452 aa  308  9e-83  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.902927  normal 
 
 
-
 
NC_008576  Mmc1_0300  two component, sigma54 specific, Fis family transcriptional regulator  41.48 
 
 
457 aa  308  1.0000000000000001e-82  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  39.06 
 
 
461 aa  307  2.0000000000000002e-82  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_007517  Gmet_2563  two component, sigma54 specific, Fis family transcriptional regulator  40.04 
 
 
480 aa  307  2.0000000000000002e-82  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00247378 
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  38.62 
 
 
460 aa  307  3e-82  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3413  two component, sigma54 specific, transcriptional regulator, Fis family  39.39 
 
 
453 aa  306  3e-82  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
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