| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0540 |
|---|
| Symbol | |
|---|
| ID | 3833647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 636257 |
|---|
| End bp | 637594 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637824624 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_425631 |
|---|
| Protein GI | 83591879 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTGC TGATCGTCGG CTCGCTCGAT GGACAGGTGG GCGAGGCCAG CCGCATGGCG
ATGGACCGGG GCGCCCAGGT CAGTCAGGTC GGCGGCATCG ATCAGGCTTT GGCCTTCTTG
CGCGACGGCA AGGGCGCCGA TCTGGTGATG ATCGACGTGC GTCTCGACGT CAATCGCCTG
ATGGTCGGGA TGACCGAGGA GCGCATGGCG ACGCCGGTGG TCGCCTATGG GGTGGGCACC
GATACCCAGG CCGCCGTGCG GGCGATCAAG GCCGGGGCCC GCGAATACAT CCCCCTTCCC
CCCGACCCCG AGCTGATCGC CGCCGTGCTG GAGGCGGTGA CCGAGGAAAG CCACGCCCTG
GTCTATAAGG ACCCGGCGAT GGGCGCCCTG GTGCGCATGG CCGAACAGAT CGCGCCCTCG
GATGCCAGCG TGCTGATCGT TGGCGAATCG GGCACCGGCA AGGAAATCAT CGCCCGCCAC
ATCCACCGCA AAAGCCGGCG CGCCCAGGGC CGCTTCATCG CCGTCAACTG CGCGGCGATC
CCCGAGGCCC TGTTGGAATC GGAACTGTTC GGCCACGAGA AGGGCGCCTT CACCGGCGCC
GTCGCCCGCC GGCTGGGCAA ATTCGAAGAG GCCAATGGCG GCACCTTGCT GCTTGACGAG
ATCAGCGAGA TGGACGTGCG GCTGCAGGCC AAGCTGCTGC GCGTGCTGCA GGAACGCGAG
ATCGACCGCG TTGGCGGCCG CCAGCCGATC AAGGTCGACG TGCGCATCCT CGCCACCTCC
AACCGCGATA TGGAAGCCGA GGTGCGCGCC GGCCATTTCC GCGAAGACCT GTTCTTCCGC
CTCAACGTCA TCACCCTGGC CCTGCCGCCC TTGCGCAAGC GCCCGGCCGA TATCGATCTG
CTGGCGGACC ATTTCGCCCG CAAGTTCGCC GATCTGAACG GCGTGCCCTA CCGCCCGCTC
GCCGACGAGA CCCGGCAGAG CCTGCGCGGC CATTCCTGGC GCGGCAATGT CCGCGAGTTG
GAAAACACCC TGCACCGCGC CGTCTTGCTG TCCTCGGGCC CGCGTATCCT GCCCGAGGCG
ATCTTGTTGA CCGGGGGCGA TACCGCCAAC GCCCCGGCGG GCGAAAGCAC CCTGACCGGC
TCGCTGGTCG GGCGCACTGT CGCCGATGTC GAACGCGATC TGATTATCGA CACCCTGCGC
CACACCCTGG GCAATCGCAC CCACGCCGCC ACCATTCTTG GCATCTCGAT CCGCACGCTG
CGCAACAAGC TCAAGCAGTA CACGGAAGAG GGCATTCCCG TTCCCGCCCC GGGCGAGGGC
GAGGCGACCC ATCCCTGA
|
|---|
| Protein sequence | MRLLIVGSLD GQVGEASRMA MDRGAQVSQV GGIDQALAFL RDGKGADLVM IDVRLDVNRL
MVGMTEERMA TPVVAYGVGT DTQAAVRAIK AGAREYIPLP PDPELIAAVL EAVTEESHAL
VYKDPAMGAL VRMAEQIAPS DASVLIVGES GTGKEIIARH IHRKSRRAQG RFIAVNCAAI
PEALLESELF GHEKGAFTGA VARRLGKFEE ANGGTLLLDE ISEMDVRLQA KLLRVLQERE
IDRVGGRQPI KVDVRILATS NRDMEAEVRA GHFREDLFFR LNVITLALPP LRKRPADIDL
LADHFARKFA DLNGVPYRPL ADETRQSLRG HSWRGNVREL ENTLHRAVLL SSGPRILPEA
ILLTGGDTAN APAGESTLTG SLVGRTVADV ERDLIIDTLR HTLGNRTHAA TILGISIRTL
RNKLKQYTEE GIPVPAPGEG EATHP
|
|---|
| |