More than 300 homologs were found in PanDaTox collection
for query gene PG1237 on replicon NC_002950
Organism: Porphyromonas gingivalis W83



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002950  PG1237  LuxR family transcriptional regulator  100 
 
 
199 aa  411  1e-114  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009512  Pput_3615  two component LuxR family transcriptional regulator  29.15 
 
 
219 aa  83.2  0.000000000000003  Pseudomonas putida F1  Bacteria  normal  0.378192  normal  0.274637 
 
 
-
 
NC_002947  PP_2126  LuxR family DNA-binding response regulator  29.15 
 
 
219 aa  81.3  0.000000000000008  Pseudomonas putida KT2440  Bacteria  normal  0.118459  normal  0.107719 
 
 
-
 
NC_010322  PputGB1_1667  two component LuxR family transcriptional regulator  28.89 
 
 
219 aa  79.3  0.00000000000003  Pseudomonas putida GB-1  Bacteria  normal  normal  0.869411 
 
 
-
 
NC_010501  PputW619_1643  two component LuxR family transcriptional regulator  28.44 
 
 
219 aa  76.6  0.0000000000002  Pseudomonas putida W619  Bacteria  normal  0.118638  normal 
 
 
-
 
NC_009952  Dshi_2345  two component transcriptional regulator  31.34 
 
 
220 aa  74.7  0.0000000000008  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  29.68 
 
 
253 aa  70.5  0.00000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.18 
 
 
225 aa  70.5  0.00000000001  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  30.1 
 
 
233 aa  70.5  0.00000000002  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  27.54 
 
 
223 aa  68.2  0.00000000009  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal 
 
 
-
 
NC_012854  Rleg_6399  two component transcriptional regulator, LuxR family  29.52 
 
 
214 aa  67.4  0.0000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.139442 
 
 
-
 
NC_007492  Pfl01_3957  two component LuxR family transcriptional regulator  26.46 
 
 
219 aa  67.8  0.0000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_4067  two component LuxR family transcriptional regulator  41.25 
 
 
209 aa  67.4  0.0000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  31.25 
 
 
213 aa  67  0.0000000002  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  31.25 
 
 
213 aa  67  0.0000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  48.05 
 
 
208 aa  66.6  0.0000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  27.83 
 
 
213 aa  67  0.0000000002  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  31.41 
 
 
207 aa  66.6  0.0000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.126193 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  30.66 
 
 
212 aa  65.9  0.0000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  25.94 
 
 
224 aa  65.9  0.0000000004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2437  two component transcriptional regulator, LuxR family  39.42 
 
 
218 aa  65.5  0.0000000005  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3526  DNA-binding response regulator, LuxR family  27.8 
 
 
220 aa  65.5  0.0000000005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0134281  n/a   
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  28.91 
 
 
230 aa  65.5  0.0000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_007005  Psyr_3299  LuxR response regulator receiver  27.8 
 
 
220 aa  65.1  0.0000000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0158345  normal 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  45.83 
 
 
214 aa  63.5  0.000000002  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  27.68 
 
 
234 aa  62.8  0.000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  29.41 
 
 
223 aa  63.2  0.000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.658241 
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  26.7 
 
 
237 aa  62.8  0.000000003  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  28.23 
 
 
216 aa  62.8  0.000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  46.03 
 
 
234 aa  62.4  0.000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  38.75 
 
 
213 aa  62  0.000000006  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  43.08 
 
 
242 aa  62  0.000000006  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  29.21 
 
 
206 aa  61.6  0.000000007  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  26.36 
 
 
222 aa  61.2  0.000000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_006274  BCZK1321  response regulator  28.7 
 
 
210 aa  60.8  0.00000001  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  27.78 
 
 
215 aa  61.2  0.00000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  25.23 
 
 
237 aa  60.8  0.00000001  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_013730  Slin_0700  two component transcriptional regulator, LuxR family  43.28 
 
 
218 aa  60.5  0.00000001  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00980919  normal  0.316207 
 
 
-
 
NC_008639  Cpha266_2686  two component LuxR family transcriptional regulator  49.18 
 
 
203 aa  60.8  0.00000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  29.61 
 
 
217 aa  60.5  0.00000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_009972  Haur_1104  two component LuxR family transcriptional regulator  29 
 
 
218 aa  60.5  0.00000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.348687  n/a   
 
 
-
 
NC_007413  Ava_4518  two component LuxR family transcriptional regulator  27.44 
 
 
236 aa  60.1  0.00000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2079  two component transcriptional regulator, LuxR family  27.64 
 
 
212 aa  60.5  0.00000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  44.29 
 
 
218 aa  60.1  0.00000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  46.03 
 
 
303 aa  60.5  0.00000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_009667  Oant_0443  two component LuxR family transcriptional regulator  47.83 
 
 
213 aa  59.7  0.00000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  45.59 
 
 
206 aa  58.9  0.00000004  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2370  nitrate/nitrite response regulator protein NarP  29.9 
 
 
203 aa  59.3  0.00000004  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3592  transcriptional regulator, LuxR family  42.65 
 
 
293 aa  58.9  0.00000004  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0118916  normal  0.053603 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  24.88 
 
 
219 aa  59.3  0.00000004  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0121621 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  27.36 
 
 
207 aa  58.9  0.00000005  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_009441  Fjoh_4664  two component LuxR family transcriptional regulator  48.48 
 
 
219 aa  58.9  0.00000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  26.39 
 
 
223 aa  58.5  0.00000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_007778  RPB_3065  two component LuxR family transcriptional regulator  27.57 
 
 
217 aa  58.5  0.00000007  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  34.67 
 
 
218 aa  58.5  0.00000007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  42.47 
 
 
206 aa  58.2  0.00000008  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  29.81 
 
 
207 aa  58.2  0.00000009  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_007498  Pcar_1400  two component signal transduction response regulator  27.55 
 
 
214 aa  58.2  0.00000009  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_3243  regulatory protein LuxR  29.91 
 
 
263 aa  57.8  0.00000009  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.0432907 
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  29.81 
 
 
207 aa  58.2  0.00000009  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  27.09 
 
 
225 aa  57.8  0.0000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  28.24 
 
 
210 aa  57.4  0.0000001  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  28.24 
 
 
210 aa  57.4  0.0000001  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  28.24 
 
 
210 aa  57.4  0.0000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_013061  Phep_3241  regulatory protein LuxR  29.92 
 
 
263 aa  57.4  0.0000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.685317  normal  0.0480343 
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  28.24 
 
 
210 aa  57.4  0.0000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  26.39 
 
 
218 aa  57.4  0.0000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_010571  Oter_3357  two component LuxR family transcriptional regulator  32.87 
 
 
238 aa  57.8  0.0000001  Opitutus terrae PB90-1  Bacteria  normal  0.1255  normal 
 
 
-
 
NC_013947  Snas_1734  two component transcriptional regulator, LuxR family  36.36 
 
 
188 aa  57.4  0.0000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.34281  normal 
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  28.24 
 
 
210 aa  57.4  0.0000001  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  28.24 
 
 
210 aa  57.4  0.0000001  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  26.39 
 
 
218 aa  57.4  0.0000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  28.24 
 
 
210 aa  57.4  0.0000001  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_013132  Cpin_1732  two component transcriptional regulator, LuxR family  27.62 
 
 
211 aa  57.8  0.0000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  27.98 
 
 
210 aa  57  0.0000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  27.11 
 
 
221 aa  57  0.0000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  44.44 
 
 
225 aa  56.6  0.0000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  28.16 
 
 
241 aa  57  0.0000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  28.24 
 
 
210 aa  56.6  0.0000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  25.23 
 
 
213 aa  57  0.0000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_013037  Dfer_4502  two component transcriptional regulator, LuxR family  26.37 
 
 
205 aa  57  0.0000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.438194 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.25 
 
 
216 aa  57  0.0000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  25.71 
 
 
210 aa  57  0.0000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_1440  two component transcriptional regulator, LuxR family  38.46 
 
 
208 aa  56.6  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2343  two component LuxR family transcriptional regulator  26.87 
 
 
211 aa  56.6  0.0000003  Dechloromonas aromatica RCB  Bacteria  normal  0.999882  normal  0.0841394 
 
 
-
 
NC_013165  Shel_06810  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.55 
 
 
520 aa  56.2  0.0000003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.521043 
 
 
-
 
NC_007347  Reut_A3419  LuxR response regulator receiver  47.37 
 
 
231 aa  56.6  0.0000003  Ralstonia eutropha JMP134  Bacteria  normal  0.393456  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  25.11 
 
 
250 aa  56.2  0.0000003  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  29.09 
 
 
223 aa  56.2  0.0000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  43.28 
 
 
218 aa  56.2  0.0000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_008061  Bcen_4961  two component LuxR family transcriptional regulator  27.75 
 
 
214 aa  56.2  0.0000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.373586  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  27.01 
 
 
215 aa  56.2  0.0000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0042  nitrate/nitrite response regulator protein  24.64 
 
 
209 aa  56.6  0.0000003  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3199  two component LuxR family transcriptional regulator  27.75 
 
 
214 aa  56.2  0.0000003  Burkholderia cenocepacia HI2424  Bacteria  normal  0.529866  normal 
 
 
-
 
NC_013411  GYMC61_2911  two component transcriptional regulator, LuxR family  28.3 
 
 
209 aa  56.2  0.0000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_0609  two component LuxR family transcriptional regulator  30.77 
 
 
199 aa  56.6  0.0000003  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4219  two component LuxR family transcriptional regulator  28.21 
 
 
212 aa  56.2  0.0000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.186755  normal  0.698621 
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  33.73 
 
 
221 aa  56.2  0.0000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_008255  CHU_0659  fimbrial Z protein; signal transducer  40.98 
 
 
212 aa  55.8  0.0000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.379451 
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  28.24 
 
 
210 aa  55.8  0.0000004  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
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