More than 300 homologs were found in PanDaTox collection
for query gene Ndas_1656 on replicon NC_014210
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014210  Ndas_1656  short-chain dehydrogenase/reductase SDR  100 
 
 
238 aa  466  9.999999999999999e-131  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0928791  normal 
 
 
-
 
NC_013757  Gobs_4278  short-chain dehydrogenase/reductase SDR  50.84 
 
 
233 aa  175  6e-43  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.717323  n/a   
 
 
-
 
NC_009664  Krad_3783  short-chain dehydrogenase/reductase SDR  41.89 
 
 
217 aa  100  2e-20  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.733178  normal  0.764355 
 
 
-
 
NC_011368  Rleg2_5083  short-chain dehydrogenase/reductase SDR  25.11 
 
 
250 aa  78.2  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.130584  normal 
 
 
-
 
NC_008726  Mvan_4623  short-chain dehydrogenase/reductase SDR  31.25 
 
 
265 aa  77.4  0.0000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2956  short-chain dehydrogenase/reductase SDR  26.32 
 
 
252 aa  77  0.0000000000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.717982 
 
 
-
 
NC_011886  Achl_2544  short-chain dehydrogenase/reductase SDR  35.61 
 
 
217 aa  73.9  0.000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000636586 
 
 
-
 
NC_010515  Bcenmc03_5071  short-chain dehydrogenase/reductase SDR  26.9 
 
 
252 aa  73.2  0.000000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2715  Short-chain dehydrogenase/reductase SDR  25.26 
 
 
254 aa  73.2  0.000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.479047 
 
 
-
 
NC_008061  Bcen_3162  short-chain dehydrogenase/reductase SDR  26.9 
 
 
252 aa  73.2  0.000000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5206  short-chain dehydrogenase/reductase SDR  26.9 
 
 
252 aa  73.2  0.000000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0231345 
 
 
-
 
NC_009720  Xaut_0982  short-chain dehydrogenase/reductase SDR  30.23 
 
 
268 aa  70.5  0.00000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  27.27 
 
 
239 aa  70.5  0.00000000002  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0501  short-chain dehydrogenase/reductase SDR  25.12 
 
 
264 aa  69.3  0.00000000004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.132419  n/a   
 
 
-
 
NC_010676  Bphyt_4345  short-chain dehydrogenase/reductase SDR  24.74 
 
 
253 aa  69.7  0.00000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.120533  normal 
 
 
-
 
NC_007798  NSE_0665  3-oxoacyl-[acyl-carrier protein] reductase  26.9 
 
 
246 aa  69.3  0.00000000005  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  0.719138  n/a   
 
 
-
 
NC_004578  PSPTO_1582  oxidoreductase, short-chain dehydrogenase/reductase family  26.51 
 
 
253 aa  67.8  0.0000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.518044  n/a   
 
 
-
 
NC_013526  Tter_2271  short-chain dehydrogenase/reductase SDR  28.79 
 
 
257 aa  67  0.0000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2442  putative short-chain dehydrogenase  26.8 
 
 
231 aa  67  0.0000000003  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.198493 
 
 
-
 
NC_013510  Tcur_3953  short-chain dehydrogenase/reductase SDR  34.5 
 
 
292 aa  66.6  0.0000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1178  short-chain dehydrogenase/reductase SDR  27.6 
 
 
239 aa  66.2  0.0000000004  Dickeya zeae Ech1591  Bacteria  normal  0.300792  n/a   
 
 
-
 
NC_013037  Dfer_2855  short-chain dehydrogenase/reductase SDR  24.45 
 
 
253 aa  66.2  0.0000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.243051  normal  0.0981468 
 
 
-
 
NC_013739  Cwoe_2297  short-chain dehydrogenase/reductase SDR  32.1 
 
 
267 aa  65.5  0.0000000008  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0843841 
 
 
-
 
NC_009667  Oant_0571  3-ketoacyl-(acyl-carrier-protein) reductase  30.3 
 
 
245 aa  65.1  0.000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.653945  n/a   
 
 
-
 
NC_012853  Rleg_5613  short-chain dehydrogenase/reductase SDR  30.67 
 
 
288 aa  64.7  0.000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.207761 
 
 
-
 
NC_009972  Haur_1067  short-chain dehydrogenase/reductase SDR  26.46 
 
 
258 aa  65.1  0.000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5292  short-chain dehydrogenase/reductase SDR  30.3 
 
 
300 aa  65.1  0.000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.319997  normal  0.350002 
 
 
-
 
NC_007333  Tfu_1682  3-ketoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
252 aa  63.5  0.000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0374  3-oxoacyl-[acyl-carrier-protein] reductase  23.59 
 
 
244 aa  64.3  0.000000002  Ehrlichia canis str. Jake  Bacteria  normal  0.333975  n/a   
 
 
-
 
NC_008709  Ping_0951  short chain dehydrogenase  28.72 
 
 
268 aa  63.9  0.000000002  Psychromonas ingrahamii 37  Bacteria  normal  0.333261  normal 
 
 
-
 
NC_014212  Mesil_1171  short-chain dehydrogenase/reductase SDR  28.76 
 
 
238 aa  63.2  0.000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.399765 
 
 
-
 
NC_007406  Nwi_2662  short-chain dehydrogenase/reductase SDR  26.67 
 
 
286 aa  63.2  0.000000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.392241  normal 
 
 
-
 
NC_010725  Mpop_4720  short-chain dehydrogenase/reductase SDR  32.93 
 
 
290 aa  62.8  0.000000004  Methylobacterium populi BJ001  Bacteria  normal  decreased coverage  0.00355451 
 
 
-
 
NC_011757  Mchl_4573  short-chain dehydrogenase/reductase SDR  32.32 
 
 
290 aa  63.2  0.000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0102101 
 
 
-
 
NC_010172  Mext_4203  short-chain dehydrogenase/reductase SDR  32.32 
 
 
290 aa  63.2  0.000000004  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.424888 
 
 
-
 
NC_009092  Shew_1326  short-chain dehydrogenase/reductase SDR  32.32 
 
 
253 aa  63.2  0.000000004  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1313  short-chain dehydrogenase/reductase SDR  27.54 
 
 
262 aa  62.4  0.000000005  Spirosoma linguale DSM 74  Bacteria  normal  0.133593  normal  0.554394 
 
 
-
 
NC_013456  VEA_003615  oxidoreductase short-chain dehydrogenase/reductase family  27.16 
 
 
264 aa  62.8  0.000000005  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  29.29 
 
 
264 aa  62.4  0.000000007  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4285  short chain dehydrogenase/reductase family oxidoreductase  30.77 
 
 
249 aa  62  0.000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1897  short-chain dehydrogenase/reductase SDR  26.87 
 
 
247 aa  62  0.000000008  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.00100219 
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  26.75 
 
 
238 aa  62  0.000000008  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_008541  Arth_1787  short-chain dehydrogenase/reductase SDR  29.06 
 
 
258 aa  62  0.000000009  Arthrobacter sp. FB24  Bacteria  normal  0.210757  n/a   
 
 
-
 
NC_009783  VIBHAR_02553  hypothetical protein  31.82 
 
 
244 aa  61.2  0.00000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_4321  short-chain dehydrogenase/reductase SDR  22.37 
 
 
260 aa  61.6  0.00000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.488757  normal  0.0305569 
 
 
-
 
NC_013132  Cpin_6680  short-chain dehydrogenase/reductase SDR  22.48 
 
 
258 aa  61.6  0.00000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0895  3-oxoacyl-(acyl-carrier-protein) reductase  30.85 
 
 
245 aa  61.6  0.00000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0373369 
 
 
-
 
NC_009656  PSPA7_6322  putative short-chain dehydrogenase  32.11 
 
 
252 aa  61.2  0.00000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3476  short-chain dehydrogenase/reductase SDR  32.5 
 
 
257 aa  61.6  0.00000001  Thermomonospora curvata DSM 43183  Bacteria  normal  0.746633  n/a   
 
 
-
 
NC_008148  Rxyl_0016  short-chain dehydrogenase/reductase SDR  28.75 
 
 
260 aa  61.6  0.00000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3000  short-chain dehydrogenase/reductase SDR  31.9 
 
 
241 aa  61.2  0.00000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4152  short-chain dehydrogenase/reductase SDR  33.33 
 
 
257 aa  61.2  0.00000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_72840  putative short-chain dehydrogenase  32.11 
 
 
252 aa  61.2  0.00000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.118155  normal 
 
 
-
 
NC_010717  PXO_06178  dehydrogenase with different specificities  28.93 
 
 
250 aa  60.8  0.00000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0668651  n/a   
 
 
-
 
NC_013093  Amir_7045  short-chain dehydrogenase/reductase SDR  31.71 
 
 
250 aa  60.8  0.00000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_0297  short-chain dehydrogenase/reductase SDR  26.82 
 
 
251 aa  60.8  0.00000002  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.677514  n/a   
 
 
-
 
NC_010676  Bphyt_6145  short-chain dehydrogenase/reductase SDR  31.06 
 
 
258 aa  60.8  0.00000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.899344  normal 
 
 
-
 
NC_010725  Mpop_1330  short-chain dehydrogenase/reductase SDR  29.7 
 
 
285 aa  60.5  0.00000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.359984 
 
 
-
 
NC_007952  Bxe_B1317  Short-chain dehydrogenase  30.72 
 
 
288 aa  60.5  0.00000002  Burkholderia xenovorans LB400  Bacteria  normal  0.169913  normal  0.0434292 
 
 
-
 
NC_010717  PXO_00988  dehydrogenase with different specificities  28.93 
 
 
250 aa  60.8  0.00000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0634  short-chain dehydrogenase/reductase SDR  23.08 
 
 
253 aa  60.8  0.00000002  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_008709  Ping_1000  short-chain dehydrogenase/reductase SDR  24.23 
 
 
240 aa  60.8  0.00000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0458  3-ketoacyl-(acyl-carrier-protein) reductase  30.52 
 
 
245 aa  60.1  0.00000003  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0463  3-ketoacyl-(acyl-carrier-protein) reductase  30.52 
 
 
245 aa  60.1  0.00000003  Brucella ovis ATCC 25840  Bacteria  normal  0.82564  n/a   
 
 
-
 
NC_013525  Tter_0268  short-chain dehydrogenase/reductase SDR  29.19 
 
 
250 aa  60.5  0.00000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_2828  short-chain dehydrogenase/reductase SDR  30.15 
 
 
250 aa  59.7  0.00000004  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4855  short-chain dehydrogenase/reductase SDR  23.9 
 
 
274 aa  59.7  0.00000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007802  Jann_2277  short-chain dehydrogenase/reductase SDR  32.24 
 
 
259 aa  59.7  0.00000004  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_1320  short-chain dehydrogenase/reductase SDR  26.94 
 
 
269 aa  59.7  0.00000004  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2093  oxidoreductase, short chain dehydrogenase/reductase family protein  22.17 
 
 
226 aa  59.3  0.00000005  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.034658  n/a   
 
 
-
 
NC_010159  YpAngola_A2488  oxidoreductase, short chain dehydrogenase/reductase family protein  22.17 
 
 
226 aa  59.3  0.00000005  Yersinia pestis Angola  Bacteria  hitchhiker  0.000275641  hitchhiker  0.0000923684 
 
 
-
 
NC_012912  Dd1591_3581  short-chain dehydrogenase/reductase SDR  26.94 
 
 
250 aa  59.3  0.00000005  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2065  short-chain dehydrogenase/reductase SDR  27.22 
 
 
248 aa  59.3  0.00000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1481  short-chain dehydrogenase/reductase SDR  25.78 
 
 
240 aa  58.9  0.00000006  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1031  short-chain dehydrogenase/reductase SDR  29.91 
 
 
233 aa  58.9  0.00000007  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4750  short-chain dehydrogenase/reductase SDR  28.48 
 
 
288 aa  58.9  0.00000007  Burkholderia phymatum STM815  Bacteria  normal  0.306467  normal  0.765133 
 
 
-
 
NC_009052  Sbal_3370  short-chain dehydrogenase/reductase SDR  25 
 
 
248 aa  58.9  0.00000007  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2319  putative short-chain dehydrogenase/reductase SDR  32.3 
 
 
259 aa  58.9  0.00000007  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_2206  short-chain dehydrogenase/reductase SDR  28.02 
 
 
261 aa  58.9  0.00000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0587036  normal  0.882414 
 
 
-
 
NC_009511  Swit_0087  3-oxoacyl-[acyl-carrier-protein] reductase  31.28 
 
 
246 aa  58.9  0.00000007  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2028  short-chain dehydrogenase/reductase SDR  27.84 
 
 
251 aa  58.5  0.00000008  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01434  Short chain dehydrogenase family protein  24.27 
 
 
239 aa  58.5  0.00000008  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2769  Short-chain dehydrogenase/reductase SDR  24.34 
 
 
252 aa  58.5  0.00000009  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0766  short-chain dehydrogenase/reductase SDR  29.09 
 
 
285 aa  58.5  0.00000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.717925 
 
 
-
 
NC_010085  Nmar_0044  short-chain dehydrogenase/reductase SDR  22.47 
 
 
264 aa  58.2  0.0000001  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009667  Oant_2067  short-chain dehydrogenase/reductase SDR  26.67 
 
 
246 aa  58.2  0.0000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1298  2-deoxy-D-gluconate 3-dehydrogenase  31.25 
 
 
249 aa  58.5  0.0000001  Thermobifida fusca YX  Bacteria  normal  0.145366  n/a   
 
 
-
 
NC_009675  Anae109_2764  short-chain dehydrogenase/reductase SDR  29.89 
 
 
293 aa  58.2  0.0000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.133433  normal 
 
 
-
 
NC_007925  RPC_1231  short-chain dehydrogenase/reductase SDR  29.88 
 
 
285 aa  57.8  0.0000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.0000245222 
 
 
-
 
NC_007954  Sden_3110  short-chain dehydrogenase/reductase SDR  27.69 
 
 
257 aa  58.2  0.0000001  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1217  short-chain dehydrogenase/reductase SDR  34.52 
 
 
267 aa  57.8  0.0000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010581  Bind_2585  short-chain dehydrogenase/reductase SDR  32.77 
 
 
259 aa  57.8  0.0000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_23050  short-chain dehydrogenase of unknown substrate specificity  29.51 
 
 
246 aa  57.8  0.0000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.223324 
 
 
-
 
NC_008228  Patl_0912  short-chain dehydrogenase/reductase SDR  27.06 
 
 
299 aa  57.8  0.0000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_4517  short-chain dehydrogenase/reductase SDR  27.54 
 
 
247 aa  58.2  0.0000001  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  27.76 
 
 
253 aa  58.2  0.0000001  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3385  short-chain dehydrogenase/reductase SDR  30.72 
 
 
248 aa  57.8  0.0000001  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0734499  n/a   
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  27.31 
 
 
255 aa  57.4  0.0000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1800  oxidoreductase  27.52 
 
 
237 aa  57.4  0.0000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.419385 
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  23.71 
 
 
239 aa  57.4  0.0000002  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
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