Gene Cpin_2065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2065 
Symbol 
ID8358217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2515916 
End bp2516662 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content46% 
IMG OID644964250 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003121759 
Protein GI256421106 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3967] Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATTC AGAGTAAAAC AGTCCTCGTA ACCGGCGGCG GTTCCGGCAT TGGATACGCT 
ATAGCAAAAT TATTAAGCGA AAAAGGGAAT AAAGTGATTC TCTCCGGTCG CAATGCTGCT
AAAATTGAAA AAGCCGCCAA AACTTTAGGG CTTGACTACA TCGTCTGCGA TGTCACCAAT
GCGGAGGCCG TTAATAACCT GGTCACAAGA CTTAATACCG ATTACGATGG TTTAAGTGTG
TTGATCAATA ATGCAGGCGT AGCCAATTTG TACAAACTAT CTGAAGATGC GCGTGCGTAT
GAAAAATCAA AACAGGAATT CGAAACCAAC TATTTCGCGC CGGTAAGACT GACAGAAGCG
CTGCTGCCAT TGCTCAAAAA GCAGCCGGAG GCAGCGATCA TCAATATCAC ATCCAATGTG
ACCTTCCATC CTTTATTAGT GCTGCCGACG TATTCAGACT CAAAAGCTGC CCTGCATTCC
CATACTGTCG CATTGAGATT AAGCCTGTCA AAGGATACCA ACATTAAAGT GTTTGAAGTG
ATGCCTTCGC TCATCAACAC AGATGCCACG AAAGACATGG GTGGCGAACA AAATGGCTTA
CCGCCACAGG TCGTAGCCGA AGACCTGTAT TATGGTCTTG AGGAAGACCG GTACGAGATC
TATGTCGGTG AAACCGGAAA GCAGCGCGAC GCCTATTTTG CAAACCCTGT TGCAGCAGTA
GAAAGCTTTA ACCAAGGCTT ATTTTGA
 
Protein sequence
MNIQSKTVLV TGGGSGIGYA IAKLLSEKGN KVILSGRNAA KIEKAAKTLG LDYIVCDVTN 
AEAVNNLVTR LNTDYDGLSV LINNAGVANL YKLSEDARAY EKSKQEFETN YFAPVRLTEA
LLPLLKKQPE AAIINITSNV TFHPLLVLPT YSDSKAALHS HTVALRLSLS KDTNIKVFEV
MPSLINTDAT KDMGGEQNGL PPQVVAEDLY YGLEEDRYEI YVGETGKQRD AYFANPVAAV
ESFNQGLF